CsGy4G024960 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G024960
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein TPR1-like isoform X2
Location	Chr4 : 30532171 .. 30533247 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCGTAAGAGATTTTTACTGTTATTATTTTGTATATATTCACACGTTTAAATGGTATACGTACGACTGATTGTGTAATTATTTCGTTTATTTTGTAGATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGAGTACGTACGCATCTATTATAAAATATTTAATTTGTGGGATTAATTAAAAGGACAAATAATTAACTTATGATGAAACCTATATGCAGTGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTTGGTCCAGCAAGCTTTTGAGCTTCTCCAAATGGACAACTTTATGCAAGTTTTCAAATTCCTTATGATTTTTCTCCCCTTAATGTTAAAATTACGGATTTTGGTTCACACCACGTCGTAGTTTCTTGATATCTTTCATGCTCACTCTATTTATTATATGTTAGGATCTACAGATAGTAAACAAATATATACTAGATGGTTACTTCTTCATGTTTGATATTTCACGAAAATCTTAAGAAGAATAATGTAATCGAATTGGAATCAAAGGACCAAATTCGAACATATATTTGATGTCTATTTTTCAAGAACATGATGTAACATGTCATCGGTACTCATCATGAAATGCAGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA

mRNA sequence

ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA

Coding sequence (CDS)

ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCGTTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA

Protein sequence

MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD

Homology

[Close]

BLAST of CsGy4G024960 vs. NCBI nr
Match: KGN55471.1 (hypothetical protein Csa_4G652830 [Cucumis sativus])

HSP 1 Score: 372.1 bits (954), Expect = 1.1e-99
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180
           YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF
Sbjct: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180

Query: 181 KD 183
           KD
Sbjct: 181 KD 182

[Close]

BLAST of CsGy4G024960 vs. NCBI nr
Match: XP_011654419.1 (PREDICTED: topless-related protein 1-like [Cucumis sativus])

HSP 1 Score: 362.1 bits (928), Expect = 1.1e-96
Identity = 182/197 (92.39%), Postives = 182/197 (92.39%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG------- 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 --------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA
Sbjct: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180

Query: 181 MASRSRPPATCRRDFKD 183
           MASRSRPPATCRRDFKD
Sbjct: 181 MASRSRPPATCRRDFKD 197

[Close]

BLAST of CsGy4G024960 vs. NCBI nr
Match: XP_008452906.1 (PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 359.4 bits (921), Expect = 7.3e-96
Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGSH+LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180
           Y+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EAMASR R PATCRRDF
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPATCRRDF 180

Query: 181 KD 183
           KD
Sbjct: 181 KD 182

[Close]

BLAST of CsGy4G024960 vs. NCBI nr
Match: XP_008452905.1 (PREDICTED: protein TPR1-like isoform X1 [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 7.6e-93
Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG------- 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 --------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 LLQMDNFMSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 183
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 197

[Close]

BLAST of CsGy4G024960 vs. NCBI nr
Match: XP_022139726.1 (protein TPR1-like isoform X2 [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-78
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEAL DGERE+AREVVE DIEIF +YNPGSH LLSS
Sbjct: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMA------SRSRPPA 180
           Y+N+KEARKVVM NIK+CI ANPL EGKL+ PPL TTLQ  YTEAMA       R  PPA
Sbjct: 121 YKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPA 180

Query: 181 TCRRDFKD 183
           TCRR+  D
Sbjct: 181 TCRRESND 186

[Close]

BLAST of CsGy4G024960 vs. TAIR10
Match: AT1G80490.2 (TOPLESS-related 1)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-30
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL FP L T+
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTS 169

[Close]

BLAST of CsGy4G024960 vs. TAIR10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.2e-30
Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 155
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of CsGy4G024960 vs. TAIR10
Match: AT3G16830.1 (TOPLESS-related 2)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-29
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   E+   LE E+G FFN+ YFEE      ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A E++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFP 153
            +  LS Y + K AR ++   +KK IEANPL   KL+FP
Sbjct: 126 ENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFP 164

[Close]

BLAST of CsGy4G024960 vs. TAIR10
Match: AT3G15880.2 (WUS-interacting protein 2)

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-29
Identity = 66/164 (40.24%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   +T   LE E+G FFNM YFE+ +    +++ E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +   A +++ K++++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL FP L  +
Sbjct: 126 ENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNS 169

[Close]

BLAST of CsGy4G024960 vs. TAIR10
Match: AT5G27030.2 (TOPLESS-related 3)

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-28
Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFL+ +   E+   LE E+G FFN  YF+E +    +++ E+YL GFT + D
Sbjct: 6   RELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   E+  A E++ +D+ +F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL FP L ++
Sbjct: 126 ENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSS 169

[Close]

BLAST of CsGy4G024960 vs. Swiss-Prot
Match: sp|Q5NBT9|TPR1_ORYSJ (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFEE ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL FP L  +
Sbjct: 126 ENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKAS 169

[Close]

BLAST of CsGy4G024960 vs. Swiss-Prot
Match: sp|Q0WV90|TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 71/164 (43.29%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL FP L T+
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTS 169

[Close]

BLAST of CsGy4G024960 vs. Swiss-Prot
Match: sp|Q0J7U6|TPR2_ORYSJ (Protein TPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.1e-29
Identity = 69/164 (42.07%), Postives = 96/164 (58.54%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+  +FNM +FE+L+    ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVED 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A E++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 158
            +  LS Y + K AR +++  +KK IEANPL   KL+FPP   +
Sbjct: 126 QNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVS 169

[Close]

BLAST of CsGy4G024960 vs. Swiss-Prot
Match: sp|Q94AI7|TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.0e-29
Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 155
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of CsGy4G024960 vs. Swiss-Prot
Match: sp|Q9LRZ0|TPR2_ARATH (Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 2.6e-28
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   E+   LE E+G FFN+ YFEE      ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNP---------------G 128
           N YS KI+F IRK K+LEAL   +R  A E++ KD+++F  +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFP 153
            +  LS Y + K AR ++   +KK IEANPL   KL+FP
Sbjct: 126 ENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFP 164

[Close]

BLAST of CsGy4G024960 vs. TrEMBL
Match: tr|A0A0A0L5R0|A0A0A0L5R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 7.2e-100
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180
           YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF
Sbjct: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180

Query: 181 KD 183
           KD
Sbjct: 181 KD 182

[Close]

BLAST of CsGy4G024960 vs. TrEMBL
Match: tr|A0A1S3BVS3|A0A1S3BVS3_CUCME (protein TPR1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.8e-96
Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGSH+LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180
           Y+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EAMASR R PATCRRDF
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPATCRRDF 180

Query: 181 KD 183
           KD
Sbjct: 181 KD 182

[Close]

BLAST of CsGy4G024960 vs. TrEMBL
Match: tr|E5GCC7|E5GCC7_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.8e-96
Identity = 175/182 (96.15%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGSH+LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDF 180
           Y+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EAMASR R PATCRRDF
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPATCRRDF 180

Query: 181 KD 183
           KD
Sbjct: 181 KD 182

[Close]

BLAST of CsGy4G024960 vs. TrEMBL
Match: tr|A0A1S3BUX9|A0A1S3BUX9_CUCME (protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 5.0e-93
Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG------- 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 --------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 LLQMDNFMSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 183
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 197

[Close]

BLAST of CsGy4G024960 vs. TrEMBL
Match: tr|A0A2N9EET2|A0A2N9EET2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS981 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.2e-35
Identity = 78/169 (46.15%), Postives = 112/169 (66.27%), Query Frame = 0


Query: 6   DPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTD 65
           DP R +L+ ILQFLD +NL ETAR+LE E+G +FNM +FE+L+    ++EAE YL GFTD
Sbjct: 3   DPSRDILYRILQFLDSENLKETARTLERESGFYFNMRFFEDLVLNGGFDEAEEYLYGFTD 62

Query: 66  IHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG------------ 125
           +HDN+YSTKI F IRK KFLE L +GER  A  ++  + + F+ YN              
Sbjct: 63  VHDNMYSTKIIFEIRKQKFLETLDEGERTKALRLLMNEFKDFEPYNESLCREASALLTLD 122

Query: 126 ---SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQ 160
              +H  L+ Y ++++AR++VM++I++CIE NP  +GKL FP  +  L+
Sbjct: 123 DFRNHESLADYGDIEDARRLVMDDIRRCIELNPAFQGKLQFPNFNANLR 171

The following BLAST results are available for this feature:

BLAST of CsGy4G024960 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55471.1	1.1e-99	100.00	hypothetical protein Csa_4G652830 [Cucumis sativus]	[more]
XP_011654419.1	1.1e-96	92.39	PREDICTED: topless-related protein 1-like [Cucumis sativus]	[more]
XP_008452906.1	7.3e-96	96.15	PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical ...	[more]
XP_008452905.1	7.6e-93	88.83	PREDICTED: protein TPR1-like isoform X1 [Cucumis melo]	[more]
XP_022139726.1	2.4e-78	78.72	protein TPR1-like isoform X2 [Momordica charantia]	[more]

BLAST of CsGy4G024960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80490.2	1.0e-30	43.29	TOPLESS-related 1	[more]
AT1G15750.1	2.2e-30	43.48	Transducin family protein / WD-40 repeat family protein	[more]
AT3G16830.1	1.4e-29	43.40	TOPLESS-related 2	[more]
AT3G15880.2	7.2e-29	40.24	WUS-interacting protein 2	[more]
AT5G27030.2	7.9e-28	40.24	TOPLESS-related 3	[more]

BLAST of CsGy4G024960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5NBT9\|TPR1_ORYSJ	1.4e-29	43.29	Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1	[more]
sp\|Q0WV90\|TPR1_ARATH	1.8e-29	43.29	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
sp\|Q0J7U6\|TPR2_ORYSJ	3.1e-29	42.07	Protein TPR2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1	[more]
sp\|Q94AI7\|TPL_ARATH	4.0e-29	43.48	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
sp\|Q9LRZ0\|TPR2_ARATH	2.6e-28	43.40	Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2	[more]

BLAST of CsGy4G024960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5R0\|A0A0A0L5R0_CUCSA	7.2e-100	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1	[more]
tr\|A0A1S3BVS3\|A0A1S3BVS3_CUCME	4.8e-96	96.15	protein TPR1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1	[more]
tr\|E5GCC7\|E5GCC7_CUCME	4.8e-96	96.15	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3BUX9\|A0A1S3BUX9_CUCME	5.0e-93	88.83	protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1	[more]
tr\|A0A2N9EET2\|A0A2N9EET2_FAGSY	6.2e-35	46.15	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS981 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR006595	CTLH_C
IPR027728	Topless_fam
IPR006594	LisH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G024960.1	CsGy4G024960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 7..39 e-value: 0.0016 score: 27.7
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 7..39 score: 9.414
IPR027728	Topless family	PANTHER	PTHR44083	FAMILY NOT NAMED	coord: 9..155
None	No IPR available	PANTHER	PTHR44083:SF2	PROTEIN TOPLESS-RELATED	coord: 9..155
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 37..95 score: 8.715

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G024960	Cla020994	Watermelon (97103) v1	cgybwmB296
CsGy4G024960	Csa4G652830	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G024960	MELO3C016997	Melon (DHL92) v3.5.1	cgybmeB270
CsGy4G024960	ClCG05G016670	Watermelon (Charleston Gray)	cgybwcgB289
CsGy4G024960	CSPI04G26620	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G024960	Lsi04G021070	Bottle gourd (USVL1VR-Ls)	cgyblsiB265
CsGy4G024960	MELO3C016997.2	Melon (DHL92) v3.6.1	cgybmedB267
CsGy4G024960	CsaV3_4G036980	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G024960	Cla97C05G097690	Watermelon (97103) v2	cgybwmbB289
CsGy4G024960	Bhi09G002429	Wax gourd	cgybwgoB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G024960	Cucurbita maxima (Rimu)	cgybcmaB508
CsGy4G024960	Cucurbita moschata (Rifu)	cgybcmoB433
CsGy4G024960	Cucurbita pepo (Zucchini)	cgybcpeB550
CsGy4G024960	Silver-seed gourd	carcgybB0633