CsGy4G020370.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy4G020370.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionLeucine-rich repeat transmembrane protein kinase protein
LocationChr4 : 27281977 .. 27287809 (+)
Sequence length375
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTTTGTTCTTGTGTTTCAATGAGTTGCATATTCAAATTGGTTTTATCTTTCTATAAGAAAAATAACTGTCTATCTGTTTGTGTATTTTGTTGTTCAGGATTCATCAGCATTGATTGTGGAATTTCAGGGAATTCAAGCTACAAAGACAGTGTAACAAACATAAAGTACATTTCTGATGTAAACTTCACAGAAACTGGAATAAGTAAGAGCATATCATCAGATTTCAACACTACCACTCTTCCACAACAGTTTTGGTATGTTAGAAGCTTTCCCGAAGGAGAAAGAAACTGTTACACCATAAAGCTTGCTCAAGGCAAAGGTTTCAAGTATTTGATCAGGGCAAGTTTTATGTATGGAAGCTATGACGGTCAAGGTACTGCTCCAGTTTTCGATCTATACATGGGAGTTAATAAATGGGGTACAGTAGTAATGGGGAATGAATCCAACATCATAATCAAAGAAGTTGTACATGTACTTCCTACATCTTCCATATGCATTTGTTTGGTCAATACTGGCTTTGGATCACCTTTTATATCAGCATTGGAGCTTAGGCTTTTGAAAAATGCAAGTTATGTCACTGATTTTGATTTGCTAGCTCTCCACAGACGGTTGGACGTTGGTTCAACAATCAACAGAACCGTCAGGTAAGACGTTTATGGGGAAAAAATGGTTAACGAAACTTGTTTTACTTTTACTGAAGCTGATGCTTGAATGTCCTTATGTCTCTTTTCAGGTACAATGATGACATTTCTGATAGGATCTGGGTGCCTTATAACTTTCTTAATTATAAAATTATGAACACTTCATCTACAGTTGATTCGGGAGGCAGCAATTCTTATAATTTACCAGGAATTGTAATGAGCACTGCCATCACAACCTATAATGCTAGTGATCCTCTGGAATTTCACTGGGTTCCTGAAGATCCCAGTGCAAGATATCATATATTCCTGCACTTTGCTGATTTGGAAAAGCTTCAAGCCAACCAATTAAGGGAATTTAACATCTATCAAAATGGAAATTATTTTCATGGACCTTTCTCTCCTGATTACTTGCAGTCAACTACATTGTCTAGCACATCCCCAATGAGTGGAGAAAATATTGCATTTTCATTATTAAAAACTAATGCATCAAATCTTCCTCCCATTCTCAATGCTCTTGAAATCTACTTGGTGCTTGACACGTTGCAATCACGCACCGATGAGCAGGACAGTACGTGCTGAGTTTTCATTTGCAGTATATTTCTCTGTCATTGGGCTGTTTTCAAATATAGCAAAATGAACCAACTTATTTACAAATATAGCAAAAAGTAAAATTTTGACGTGTTTGTAAATATTTTTAATAGTTTCACTATTTAAAATAATTTTCATTGTTCAATATAAGATATAATGTAATCATACTCTCATGCTCTTTCGGTTTTGCATTTGGATATTGCAGTTACTGCTTTGATGAACATCAAATCATTTTATGGAGTGAGAAAGAACTGGCAGGGTGATCCATGCCAGCCAAAATCTTTTTTGTGGGATGGTCTTATTTGTAGCTACGATGACCAGATTCCTAATAGAATCACCACTTTGTGAGTTTTCAAAAATACTATCATTTGGCTATATTCTTATCTATTTTCTTTCATGGACTTCTATAAACTCGACAACAGGAACTTATCTTCAAGTGGATTGGTGGGGGAAATAACTACGTATGTATCTGAATTGACAACATTACAATATTTGTAAGTCAAGAATAATTATACAACCTCCTTGTTTGATGGTTTTCTGATAATGTAAACTATAAGGGGTTTTCCATTCTTTGTACCAACAATCAGTAGTCTAAGTGAACTGCTTATGCCAGGGATTTGTCAAACAATAACTTGAGTGGACCAGTGCCCGATTCTCTATCCAAATTGCAGTCCTTGAAAGTTCTGTGAGTAACTTTTCACAAAAATGAATGATCAATGTATTTTGTTAGAAAACTAATTACTGACTGGCAATATATTTGCAGAGATTTGAGAGACAATCCACTCCTTGGTTCTATACCAAGCGAACTCGTGGAAAGATCGAAGAACGGATCCCTTTCAATAAGGTATGCCATCTTTGTTGCAAGTTCTTAAAAAAATGAGTTGTTCCGATAGAGTTTCAATAGTGTTGGTTTGTCTTCATGCTATTTTTCTTGTTTTTGTCAATTTTTTATGGATGTTTCTGTATGTATTCGTTCGTGCTTACGAAGACAAAAAGATTTCTTTGACAAATGCAATATGTTTTACCTATCAATAAACATCTCCAAAGATCAGGAACTGTGGTGTTTAAGGAAATTAATGTTAGTGATTACTACTATAATTTAAAATCTTGATTGTGTTGTCATTTGCTTTATGGAAGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTTAGAGTACAGTTTTATTGTGCAGGATTTGTGAGAGCTTTAAGACATACTTCCATGATCATGCTTTTTAAACCATCACCTATTGACAGCTCGGAAACAGCCCGTCATAAGACTCGGAACACTAGAGGAAAAAAAACAGCAACTATCTTACTCTGAAATACGACGTATAACAAACAACTTTGAGAGACAAATTGGAGAAGGAGGTTTTGCAAAAGTATTCCTTGGTAATTTGGATGATAGTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTAAGTCATCATCATCAGCGTCCTTGAATTGATTTTTCAGTGTCTAGTCTAGTTCTTAGATCTTCTGGAGTATCTTGTTCGAGATGGTTGACAGAAGAACATTCTTGTTGTTACGAAATCACCAAACAAATAATTTGAAAAATGTAAAAGAAGAAAGGATTGACACACAAATTTATATGAGTAAATGTGTTACAGCTCCAGGGTAAAGAGAAAACATTATCAAGGTGAATGTTATAGAGTATAGAATAACGGCGCCGGTAACATTAGAATTTATCTAATGCACTTCTCTGAACCCTAGGGTCATAATCATAAATAACTACAAATAATTAAAATCTGTTGAATACTAATTCTAAATAGGTTTTGGAGCGTTGCTCCCAAACCCCACTAGCAAGGCCACATATTTGATTGTTCTTGCATCAGATAACAGATTCAAGACATTTCAATACTTTGTGTTTCGTTGATTATGTATGTCACTAAGTAAACAAGAATTTACTGTTAAGCTGTCAGTTTTTTGGTATATGGCAGTGTGTGCTGGCAATAAATAGTGTCAAAACATTCCTATGAATCTATGATGGCACTCGTTTCCTGATCTTAAGGATATAATAAAATTGCAAGAACTAAGTTGAAGAAGATATTTTTCCATCCATTTTTCGAGGAAAAAAAAGGGCCTAGCGTTAGTAAACAAGTGGAAGAGACCTAAGTAAAAAGGAAAAAACCAAAGTTACTTTAAGAGAAATATAAATGGATTCGAAAGAAGGGCGGAACCAAAACCAAAAGAGATACAAAAGATTTTCTCCAAAATAAAGGACCACGTTGTCTTTGAAGTAAAAAATAGATACCACTCTAGGCTCCACGTTGTCTTTGATTCTCCTTTGCTTGATTATTGTTCTTCATTAATTTTCTTGGATGCTTGTGTTATTGTTTTCAATTGCTTGAACAAATCTTGATTTCTCTTTCTACATTTCTGTTCTGTATCATGAAAATATCCCTTTGTTTACATTACAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACCAGCCTTGTTGGATACTGCTGCCAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAACAATGGCAACTTAAAAGAGCATCTATCAGGTTTCTGTTACTGTTTGAATTTCTATTTTAGAGAGAAAAACACCCTTTTAATATCTTTTTTTTTTTTGCTGCGAATTCGCCTAAACAGACAAATGTAAAAAAAGAGAGTCAACACACAAATTTACATGATTTACTAACGGTGTGTTAGTAAGAGTTAGAGCATTTATATACTGCACAAGTCATAATCATAAATAACCATACATATTAAATGTGTTGAATACAAATTCTAGATAACAAATTCAAGGCATCCTTACATTTTCTATAGGTTTGTTTTGTTATCATCAATATTGACTGGTGAGTAGTAACTGAAGATTAAAATGATATGTAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGGTTGGATGCAATTCTAGCTAATCTTGTTTATAACAATGTTTTGGTATTGTTGATGATTCCTCTTGGGATTGAATGAGGTCTTTGAAATCTAGGGTTGGAGTATCTGCATCATGGTTGTAGGCCACCGATTGTTCATAGAGATGTGAAATCTGCAAACATCCTTTTGAATGAAAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCCAAGAGTTTTCCAACCGAAAGCCGTACTCATATGACAACCGTTGTTGCGGGGACCGATGGTTATCTCGATCCCGAGTAAGTTTGTTTTGGTTGTTGATCAACTACATATTGATATAGTGAAAGGAAAGAAAAATTTAAGAGATACGAACTCTCAAATAGAGAAAATATATGAACAAATAATACAATCAAACAGAGATCTCCTTCCAAACAACTTCGATCGGCATGTTTACTTCAAATATGGAAAAACAAAGGCATTACAAAACTAGCTACCGAAGAAACCAAAAAAATGAGCACCAACCAACAAAGAACAAATTGAAAAATTTTCAACAATGCACGAATTGACGAACCAACACAAGGATTCTTGAAAAGAAACTTTCTCCTAACGCTCTAAAACCTTCCAACAAAAGGACGAAATAGAGCCCAACGAAAGTGATATTAAACAACCACCACTTTATACTTCCAAAAACCGCAAACAAGAATCCAACCACCCTCAATGAAGCAACCCCGTCGAATTTATTTTCTCAATGGGGCTGCTTGATCTGGAGTAGGTTTTCATCTTTTATTAATTTATAATCTTTGAATAGACTAAATAATTGGAATATATAATATAGCAATAGAGAGTCTAACATAAAAAGCAGGTTTATGTGAAATCACCATTATAATAAAACACACAAATAGTTGAATGAGTTCACTGTTCTTGCATATATCCCTATAAGCTCAATAAATCAATATATGAAACTTCTTATACTTTTCAAAACCAATTCATGGATCTTGGGTGCAGGTATTATGCAACTGGCTGGTTGACTGAGAAAAGTGATGTTTATAGTTTTGGAGTTCTTGTATTGGAAATCGTTACTTCTCGTCCAGTCCTGATGATCGACAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTTATGCAATTGATGAAAATAGGTGATATAAGGAGCATTGTTGATCAAAAGGTGAGGGAAAACTTTGACTTGAGTTCTGCTTGGAAGGCAGTGGAGATTGCAATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAACATGAAAGAGGTAGTTTCGGAGTTGAGCGAGTGTTTGGCGTTAGAGAAAGCTCGGAAAAGAAAAAACGCTGACACTGACATGAGAAAATCAAATCCAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

mRNA sequence

ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTACAATGATGACATTTCTGATAGGATCTGGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

Coding sequence (CDS)

ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTACAATGATGACATTTCTGATAGGATCTGGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

Protein sequence

MEQIKYFLLQIFVVLAISFLVSAQDQSGTMMTFLIGSGVGAGGNTDLCASSSCPKKKKSYVIMIVAIVSSFLVLLAATSVLIILWRKRGSKGSVLSWEERMQVAVNSAQVSRNFRESEVTPFAR
Homology
[Close]
BLAST of CsGy4G020370.1 vs. NCBI nr
Match: XP_008464660.1 (PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-03
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MEQIKYFLLQIFVVLAISFLVSAQDQSG 29
          MEQIKYFLLQIFVVLAISFLVSAQDQSG
Sbjct: 3  MEQIKYFLLQIFVVLAISFLVSAQDQSG 30

[Close]
BLAST of CsGy4G020370.1 vs. TrEMBL
Match: tr|A0A1S3CNJ9|A0A1S3CNJ9_CUCME (putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Cucumis melo OX=3656 GN=LOC103502494 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.6e-04
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MEQIKYFLLQIFVVLAISFLVSAQDQSG 29
          MEQIKYFLLQIFVVLAISFLVSAQDQSG
Sbjct: 3  MEQIKYFLLQIFVVLAISFLVSAQDQSG 30

The following BLAST results are available for this feature:
BLAST of CsGy4G020370.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464660.11.0e-03100.00PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 [... [more]
BLAST of CsGy4G020370.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G020370.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G020370.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CNJ9|A0A1S3CNJ9_CUCME6.6e-04100.00putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Cucumis m... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy4G020370CsGy4G020370gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy4G020370.1CsGy4G020370.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G020370.1.exon.1CsGy4G020370.1.exon.1exon
CsGy4G020370.1.exon.2CsGy4G020370.1.exon.2exon
CsGy4G020370.1.exon.3CsGy4G020370.1.exon.3exon
CsGy4G020370.1.exon.4CsGy4G020370.1.exon.4exon
CsGy4G020370.1.exon.5CsGy4G020370.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G020370.1.CDS.1CsGy4G020370.1.CDS.1CDS
CsGy4G020370.1.CDS.2CsGy4G020370.1.CDS.2CDS
CsGy4G020370.1.CDS.3CsGy4G020370.1.CDS.3CDS
CsGy4G020370.1.CDS.4CsGy4G020370.1.CDS.4CDS
CsGy4G020370.1.CDS.5CsGy4G020370.1.CDS.5CDS