CsGy4G020370 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G020370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Leucine-rich repeat transmembrane protein kinase protein
Location	Chr4 : 27281977 .. 27287809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTTTGTTCTTGTGTTTCAATGAGTTGCATATTCAAATTGGTTTTATCTTTCTATAAGAAAAATAACTGTCTATCTGTTTGTGTATTTTGTTGTTCAGGATTCATCAGCATTGATTGTGGAATTTCAGGGAATTCAAGCTACAAAGACAGTGTAACAAACATAAAGTACATTTCTGATGTAAACTTCACAGAAACTGGAATAAGTAAGAGCATATCATCAGATTTCAACACTACCACTCTTCCACAACAGTTTTGGTATGTTAGAAGCTTTCCCGAAGGAGAAAGAAACTGTTACACCATAAAGCTTGCTCAAGGCAAAGGTTTCAAGTATTTGATCAGGGCAAGTTTTATGTATGGAAGCTATGACGGTCAAGGTACTGCTCCAGTTTTCGATCTATACATGGGAGTTAATAAATGGGGTACAGTAGTAATGGGGAATGAATCCAACATCATAATCAAAGAAGTTGTACATGTACTTCCTACATCTTCCATATGCATTTGTTTGGTCAATACTGGCTTTGGATCACCTTTTATATCAGCATTGGAGCTTAGGCTTTTGAAAAATGCAAGTTATGTCACTGATTTTGATTTGCTAGCTCTCCACAGACGGTTGGACGTTGGTTCAACAATCAACAGAACCGTCAGGTAAGACGTTTATGGGGAAAAAATGGTTAACGAAACTTGTTTTACTTTTACTGAAGCTGATGCTTGAATGTCCTTATGTCTCTTTTCAGGTACAATGATGACATTTCTGATAGGATCTGGGTGCCTTATAACTTTCTTAATTATAAAATTATGAACACTTCATCTACAGTTGATTCGGGAGGCAGCAATTCTTATAATTTACCAGGAATTGTAATGAGCACTGCCATCACAACCTATAATGCTAGTGATCCTCTGGAATTTCACTGGGTTCCTGAAGATCCCAGTGCAAGATATCATATATTCCTGCACTTTGCTGATTTGGAAAAGCTTCAAGCCAACCAATTAAGGGAATTTAACATCTATCAAAATGGAAATTATTTTCATGGACCTTTCTCTCCTGATTACTTGCAGTCAACTACATTGTCTAGCACATCCCCAATGAGTGGAGAAAATATTGCATTTTCATTATTAAAAACTAATGCATCAAATCTTCCTCCCATTCTCAATGCTCTTGAAATCTACTTGGTGCTTGACACGTTGCAATCACGCACCGATGAGCAGGACAGTACGTGCTGAGTTTTCATTTGCAGTATATTTCTCTGTCATTGGGCTGTTTTCAAATATAGCAAAATGAACCAACTTATTTACAAATATAGCAAAAAGTAAAATTTTGACGTGTTTGTAAATATTTTTAATAGTTTCACTATTTAAAATAATTTTCATTGTTCAATATAAGATATAATGTAATCATACTCTCATGCTCTTTCGGTTTTGCATTTGGATATTGCAGTTACTGCTTTGATGAACATCAAATCATTTTATGGAGTGAGAAAGAACTGGCAGGGTGATCCATGCCAGCCAAAATCTTTTTTGTGGGATGGTCTTATTTGTAGCTACGATGACCAGATTCCTAATAGAATCACCACTTTGTGAGTTTTCAAAAATACTATCATTTGGCTATATTCTTATCTATTTTCTTTCATGGACTTCTATAAACTCGACAACAGGAACTTATCTTCAAGTGGATTGGTGGGGGAAATAACTACGTATGTATCTGAATTGACAACATTACAATATTTGTAAGTCAAGAATAATTATACAACCTCCTTGTTTGATGGTTTTCTGATAATGTAAACTATAAGGGGTTTTCCATTCTTTGTACCAACAATCAGTAGTCTAAGTGAACTGCTTATGCCAGGGATTTGTCAAACAATAACTTGAGTGGACCAGTGCCCGATTCTCTATCCAAATTGCAGTCCTTGAAAGTTCTGTGAGTAACTTTTCACAAAAATGAATGATCAATGTATTTTGTTAGAAAACTAATTACTGACTGGCAATATATTTGCAGAGATTTGAGAGACAATCCACTCCTTGGTTCTATACCAAGCGAACTCGTGGAAAGATCGAAGAACGGATCCCTTTCAATAAGGTATGCCATCTTTGTTGCAAGTTCTTAAAAAAATGAGTTGTTCCGATAGAGTTTCAATAGTGTTGGTTTGTCTTCATGCTATTTTTCTTGTTTTTGTCAATTTTTTATGGATGTTTCTGTATGTATTCGTTCGTGCTTACGAAGACAAAAAGATTTCTTTGACAAATGCAATATGTTTTACCTATCAATAAACATCTCCAAAGATCAGGAACTGTGGTGTTTAAGGAAATTAATGTTAGTGATTACTACTATAATTTAAAATCTTGATTGTGTTGTCATTTGCTTTATGGAAGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTTAGAGTACAGTTTTATTGTGCAGGATTTGTGAGAGCTTTAAGACATACTTCCATGATCATGCTTTTTAAACCATCACCTATTGACAGCTCGGAAACAGCCCGTCATAAGACTCGGAACACTAGAGGAAAAAAAACAGCAACTATCTTACTCTGAAATACGACGTATAACAAACAACTTTGAGAGACAAATTGGAGAAGGAGGTTTTGCAAAAGTATTCCTTGGTAATTTGGATGATAGTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTAAGTCATCATCATCAGCGTCCTTGAATTGATTTTTCAGTGTCTAGTCTAGTTCTTAGATCTTCTGGAGTATCTTGTTCGAGATGGTTGACAGAAGAACATTCTTGTTGTTACGAAATCACCAAACAAATAATTTGAAAAATGTAAAAGAAGAAAGGATTGACACACAAATTTATATGAGTAAATGTGTTACAGCTCCAGGGTAAAGAGAAAACATTATCAAGGTGAATGTTATAGAGTATAGAATAACGGCGCCGGTAACATTAGAATTTATCTAATGCACTTCTCTGAACCCTAGGGTCATAATCATAAATAACTACAAATAATTAAAATCTGTTGAATACTAATTCTAAATAGGTTTTGGAGCGTTGCTCCCAAACCCCACTAGCAAGGCCACATATTTGATTGTTCTTGCATCAGATAACAGATTCAAGACATTTCAATACTTTGTGTTTCGTTGATTATGTATGTCACTAAGTAAACAAGAATTTACTGTTAAGCTGTCAGTTTTTTGGTATATGGCAGTGTGTGCTGGCAATAAATAGTGTCAAAACATTCCTATGAATCTATGATGGCACTCGTTTCCTGATCTTAAGGATATAATAAAATTGCAAGAACTAAGTTGAAGAAGATATTTTTCCATCCATTTTTCGAGGAAAAAAAAGGGCCTAGCGTTAGTAAACAAGTGGAAGAGACCTAAGTAAAAAGGAAAAAACCAAAGTTACTTTAAGAGAAATATAAATGGATTCGAAAGAAGGGCGGAACCAAAACCAAAAGAGATACAAAAGATTTTCTCCAAAATAAAGGACCACGTTGTCTTTGAAGTAAAAAATAGATACCACTCTAGGCTCCACGTTGTCTTTGATTCTCCTTTGCTTGATTATTGTTCTTCATTAATTTTCTTGGATGCTTGTGTTATTGTTTTCAATTGCTTGAACAAATCTTGATTTCTCTTTCTACATTTCTGTTCTGTATCATGAAAATATCCCTTTGTTTACATTACAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACCAGCCTTGTTGGATACTGCTGCCAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAACAATGGCAACTTAAAAGAGCATCTATCAGGTTTCTGTTACTGTTTGAATTTCTATTTTAGAGAGAAAAACACCCTTTTAATATCTTTTTTTTTTTTGCTGCGAATTCGCCTAAACAGACAAATGTAAAAAAAGAGAGTCAACACACAAATTTACATGATTTACTAACGGTGTGTTAGTAAGAGTTAGAGCATTTATATACTGCACAAGTCATAATCATAAATAACCATACATATTAAATGTGTTGAATACAAATTCTAGATAACAAATTCAAGGCATCCTTACATTTTCTATAGGTTTGTTTTGTTATCATCAATATTGACTGGTGAGTAGTAACTGAAGATTAAAATGATATGTAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGGTTGGATGCAATTCTAGCTAATCTTGTTTATAACAATGTTTTGGTATTGTTGATGATTCCTCTTGGGATTGAATGAGGTCTTTGAAATCTAGGGTTGGAGTATCTGCATCATGGTTGTAGGCCACCGATTGTTCATAGAGATGTGAAATCTGCAAACATCCTTTTGAATGAAAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCCAAGAGTTTTCCAACCGAAAGCCGTACTCATATGACAACCGTTGTTGCGGGGACCGATGGTTATCTCGATCCCGAGTAAGTTTGTTTTGGTTGTTGATCAACTACATATTGATATAGTGAAAGGAAAGAAAAATTTAAGAGATACGAACTCTCAAATAGAGAAAATATATGAACAAATAATACAATCAAACAGAGATCTCCTTCCAAACAACTTCGATCGGCATGTTTACTTCAAATATGGAAAAACAAAGGCATTACAAAACTAGCTACCGAAGAAACCAAAAAAATGAGCACCAACCAACAAAGAACAAATTGAAAAATTTTCAACAATGCACGAATTGACGAACCAACACAAGGATTCTTGAAAAGAAACTTTCTCCTAACGCTCTAAAACCTTCCAACAAAAGGACGAAATAGAGCCCAACGAAAGTGATATTAAACAACCACCACTTTATACTTCCAAAAACCGCAAACAAGAATCCAACCACCCTCAATGAAGCAACCCCGTCGAATTTATTTTCTCAATGGGGCTGCTTGATCTGGAGTAGGTTTTCATCTTTTATTAATTTATAATCTTTGAATAGACTAAATAATTGGAATATATAATATAGCAATAGAGAGTCTAACATAAAAAGCAGGTTTATGTGAAATCACCATTATAATAAAACACACAAATAGTTGAATGAGTTCACTGTTCTTGCATATATCCCTATAAGCTCAATAAATCAATATATGAAACTTCTTATACTTTTCAAAACCAATTCATGGATCTTGGGTGCAGGTATTATGCAACTGGCTGGTTGACTGAGAAAAGTGATGTTTATAGTTTTGGAGTTCTTGTATTGGAAATCGTTACTTCTCGTCCAGTCCTGATGATCGACAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTTATGCAATTGATGAAAATAGGTGATATAAGGAGCATTGTTGATCAAAAGGTGAGGGAAAACTTTGACTTGAGTTCTGCTTGGAAGGCAGTGGAGATTGCAATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAACATGAAAGAGGTAGTTTCGGAGTTGAGCGAGTGTTTGGCGTTAGAGAAAGCTCGGAAAAGAAAAAACGCTGACACTGACATGAGAAAATCAAATCCAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

mRNA sequence

ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTACAATGATGACATTTCTGATAGGATCTGGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

Coding sequence (CDS)

ATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTAGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAATCAGGTACAATGATGACATTTCTGATAGGATCTGGGGTTGGAGCCGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGTTATGTTATTATGATTGTAGCGATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGGTAGCAAAGGCAGTGTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG

Protein sequence

MEQIKYFLLQIFVVLAISFLVSAQDQSGTMMTFLIGSGVGAGGNTDLCASSSCPKKKKSYVIMIVAIVSSFLVLLAATSVLIILWRKRGSKGSVLSWEERMQVAVNSAQVSRNFRESEVTPFAR

Homology

[Close]

BLAST of CsGy4G020370 vs. NCBI nr
Match: XP_008464660.1 (PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-03
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MEQIKYFLLQIFVVLAISFLVSAQDQSG 29
          MEQIKYFLLQIFVVLAISFLVSAQDQSG
Sbjct: 3  MEQIKYFLLQIFVVLAISFLVSAQDQSG 30

[Close]

BLAST of CsGy4G020370 vs. TrEMBL
Match: tr|A0A1S3CNJ9|A0A1S3CNJ9_CUCME (putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Cucumis melo OX=3656 GN=LOC103502494 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.6e-04
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MEQIKYFLLQIFVVLAISFLVSAQDQSG 29
          MEQIKYFLLQIFVVLAISFLVSAQDQSG
Sbjct: 3  MEQIKYFLLQIFVVLAISFLVSAQDQSG 30

The following BLAST results are available for this feature:

BLAST of CsGy4G020370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464660.1	1.0e-03	100.00	PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210 [...	[more]

BLAST of CsGy4G020370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G020370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G020370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNJ9\|A0A1S3CNJ9_CUCME	6.6e-04	100.00	putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Cucumis m...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G020370.1	CsGy4G020370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G020370	MELO3C026395.2	Melon (DHL92) v3.6.1	cgybmedB255
CsGy4G020370	CsaV3_4G032220	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G020370	Bhi09G002976	Wax gourd	cgybwgoB398

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G020370	Cucumber (Chinese Long) v3	cgybcucB176
CsGy4G020370	Watermelon (97103) v2	cgybwmbB265
CsGy4G020370	Cucumber (Gy14) v2	cgybcgybB121
CsGy4G020370	Cucurbita maxima (Rimu)	cgybcmaB470
CsGy4G020370	Cucurbita maxima (Rimu)	cgybcmaB505
CsGy4G020370	Cucurbita moschata (Rifu)	cgybcmoB437
CsGy4G020370	Cucurbita moschata (Rifu)	cgybcmoB477
CsGy4G020370	Cucurbita pepo (Zucchini)	cgybcpeB540
CsGy4G020370	Cucurbita pepo (Zucchini)	cgybcpeB547
CsGy4G020370	Cucurbita pepo (Zucchini)	cgybcpeB566
CsGy4G020370	Cucumber (Chinese Long) v2	cgybcuB166
CsGy4G020370	Cucumber (Chinese Long) v2	cgybcuB175
CsGy4G020370	Bottle gourd (USVL1VR-Ls)	cgyblsiB263
CsGy4G020370	Melon (DHL92) v3.5.1	cgybmeB258
CsGy4G020370	Watermelon (Charleston Gray)	cgybwcgB259
CsGy4G020370	Watermelon (97103) v1	cgybwmB326
CsGy4G020370	Wild cucumber (PI 183967)	cgybcpiB169
CsGy4G020370	Wild cucumber (PI 183967)	cgybcpiB177
CsGy4G020370	Silver-seed gourd	carcgybB0636
CsGy4G020370	Silver-seed gourd	carcgybB1029