CsGy4G018740.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy4G018740.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionRING/U-box superfamily protein
LocationChr4 : 24577114 .. 24578708 (-)
Sequence length264
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCTCGTCTCCTACCACTTCAGGTTAAAGCTCTTTTGCCATCCATTTTGTTGTTTCTCATAGTTGATATCGTTATTATGGTACCATGCAATACGTATTCATGACTTGGAATTGTTTTTTCCCTCAATGTAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGGTTTTTTCTTTCTAAATCTTACATGCAATATTTTGATTCTTTGTTTAATTCCTCTTTGTTTTAATTTTTTATATAAAGGAACTTTATTTTCATGGATTTGTAGTTTTGGGTGAAATTGATTCACTAATACCCATTCAAGATAAAAATTAGTTGCAAGTAATGTTAATATAGTTGGAATTTACCAACAAAAATTCTAGCTGTAATTTGGGAGATATTCTCAACTAGAAAGATCTATATAATGAAAAATAATTAAAAGATAAACTAATCGAATCTAAAAAAAGTTAAAATGTTTTTAGTTAATAGAAATTTACACACCTATCAAGTTGGGTTATATATATATATATATATAGAATAAAAGTCAAACTTTCATTAACTGGCATCTATATGTTTTTGAGGGCAATCTATATGTTTTTGAGGGCAAGAGGTCCTAGTTCAAATCCCCCACCTTAAAGTTTTACATAAAAGGACCTTTTTTAAAAAAATTAATTAAACTTTCGTGTTGGATTCTTCAAAATCTCCCCTCCAAAAATTCTTTGATGGGATAGGATGTAGTATGTTCCAGTATGGTATTGTTGATGTCGACTTTCTTAGACATGTAACGATGCTCTAATCGCAATCTGCATCCTTCTGTCATGATGCACAAGATTTCTGGCAATATTGTGATAGTTTTTGGTCTATTACAAAATATTTGGAATGAACTTTTTATCTTTAGTTCATTCAACAGCTTTCAAATTCAGTCCTTCCCTAAATTTCAAAACAGGTTTTTGGTATTCAACATTTGCACTACTTTTGGCTACAACTATTTATTTTAGTTTCTCTATTTTAGTTAGCCCAAGCATAGGATCAATGGTCAGCTGTAGATCTTTTATTAGTCAACTCTAGCTCAACTAGCAATAGTGTAAACTGCTGTTGGTTGCTTTTGTAACAATCTCAAAATCCTGTTTATATACTCTTTACTGAGAAGGAACCTCAATATTCTCGCGATCAGTTATCTTCTCAAACAAAGCAGAGTTTTCAACACACATACATCATAAACCTTGAAAATGTCTAATGGTTGCCTGAGTTCTCACCATGGTTGTTGAACTGCATCTTTCTGTTCAGAAAACTGTGAAAGGGTTACTTGGAAAAAAAAAATGAAAAGTTGAAACTATTTACTGATAGTTTAAAGTTATAAAGATGTAATTCTCTTCCTAAATTTTTGTGCATGTGTGGAATGTGGCAGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

mRNA sequence

ATGTATCTCGTCTCCTACCACTTCAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

Coding sequence (CDS)

ATGTATCTCGTCTCCTACCACTTCAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

Protein sequence

MYLVSYHFSECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND
Homology
[Close]
BLAST of CsGy4G018740.1 vs. NCBI nr
Match: KGN54826.1 (hypothetical protein Csa_4G508535 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 45 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 88
          FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND
Sbjct: 20 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 62

[Close]
BLAST of CsGy4G018740.1 vs. NCBI nr
Match: OIW18239.1 (hypothetical protein TanjilG_06323 [Lupinus angustifolius])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 10  ECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTK 69
           +C++KLV FLLYWFRIS PKY                     + KI G DMHV  +   K
Sbjct: 422 DCFQKLVSFLLYWFRISIPKY------------------KHQQEKIAGMDMHVGHSIIVK 474

Query: 70  TMLVREIMCVV 81
            MLV+ IMCVV
Sbjct: 482 NMLVKGIMCVV 474

[Close]
BLAST of CsGy4G018740.1 vs. TAIR10
Match: AT1G47570.1 (RING/U-box superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 0 

Query: 9   SECYEKLVGFLLYWFRISTPK 30
           ++CY+KLVGFLLYWFRI+ P+
Sbjct: 401 NDCYDKLVGFLLYWFRITLPR 421

[Close]
BLAST of CsGy4G018740.1 vs. TrEMBL
Match: tr|A0A0A0L3W7|A0A0A0L3W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508535 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.3e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 45 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 88
          FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND
Sbjct: 20 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 62

[Close]
BLAST of CsGy4G018740.1 vs. TrEMBL
Match: tr|A0A1J7HZM1|A0A1J7HZM1_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06323 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0 

Query: 10  ECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTK 69
           +C++KLV FLLYWFRIS PKY                     + KI G DMHV  +   K
Sbjct: 422 DCFQKLVSFLLYWFRISIPKY------------------KHQQEKIAGMDMHVGHSIIVK 474

Query: 70  TMLVREIMCVV 81
            MLV+ IMCVV
Sbjct: 482 NMLVKGIMCVV 474

The following BLAST results are available for this feature:
BLAST of CsGy4G018740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54826.18.0e-16100.00hypothetical protein Csa_4G508535 [Cucumis sativus][more]
OIW18239.11.3e-0545.07hypothetical protein TanjilG_06323 [Lupinus angustifolius][more]
BLAST of CsGy4G018740.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G47570.13.8e-0471.43RING/U-box superfamily protein[more]
BLAST of CsGy4G018740.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G018740.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L3W7|A0A0A0L3W7_CUCSA5.3e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508535 PE=4 SV=1[more]
tr|A0A1J7HZM1|A0A1J7HZM1_LUPAN8.4e-0645.07Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06323 PE=4 S... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy4G018740CsGy4G018740gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy4G018740.1CsGy4G018740.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G018740.1.CDS.3CsGy4G018740.1.CDS.3CDS
CsGy4G018740.1.CDS.2CsGy4G018740.1.CDS.2CDS
CsGy4G018740.1.CDS.1CsGy4G018740.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G018740.1.exon.3CsGy4G018740.1.exon.3exon
CsGy4G018740.1.exon.2CsGy4G018740.1.exon.2exon
CsGy4G018740.1.exon.1CsGy4G018740.1.exon.1exon