CsGy4G018740 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G018740
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING/U-box superfamily protein
Location	Chr4 : 24577114 .. 24578708 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCTCGTCTCCTACCACTTCAGGTTAAAGCTCTTTTGCCATCCATTTTGTTGTTTCTCATAGTTGATATCGTTATTATGGTACCATGCAATACGTATTCATGACTTGGAATTGTTTTTTCCCTCAATGTAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGGTTTTTTCTTTCTAAATCTTACATGCAATATTTTGATTCTTTGTTTAATTCCTCTTTGTTTTAATTTTTTATATAAAGGAACTTTATTTTCATGGATTTGTAGTTTTGGGTGAAATTGATTCACTAATACCCATTCAAGATAAAAATTAGTTGCAAGTAATGTTAATATAGTTGGAATTTACCAACAAAAATTCTAGCTGTAATTTGGGAGATATTCTCAACTAGAAAGATCTATATAATGAAAAATAATTAAAAGATAAACTAATCGAATCTAAAAAAAGTTAAAATGTTTTTAGTTAATAGAAATTTACACACCTATCAAGTTGGGTTATATATATATATATATATAGAATAAAAGTCAAACTTTCATTAACTGGCATCTATATGTTTTTGAGGGCAATCTATATGTTTTTGAGGGCAAGAGGTCCTAGTTCAAATCCCCCACCTTAAAGTTTTACATAAAAGGACCTTTTTTAAAAAAATTAATTAAACTTTCGTGTTGGATTCTTCAAAATCTCCCCTCCAAAAATTCTTTGATGGGATAGGATGTAGTATGTTCCAGTATGGTATTGTTGATGTCGACTTTCTTAGACATGTAACGATGCTCTAATCGCAATCTGCATCCTTCTGTCATGATGCACAAGATTTCTGGCAATATTGTGATAGTTTTTGGTCTATTACAAAATATTTGGAATGAACTTTTTATCTTTAGTTCATTCAACAGCTTTCAAATTCAGTCCTTCCCTAAATTTCAAAACAGGTTTTTGGTATTCAACATTTGCACTACTTTTGGCTACAACTATTTATTTTAGTTTCTCTATTTTAGTTAGCCCAAGCATAGGATCAATGGTCAGCTGTAGATCTTTTATTAGTCAACTCTAGCTCAACTAGCAATAGTGTAAACTGCTGTTGGTTGCTTTTGTAACAATCTCAAAATCCTGTTTATATACTCTTTACTGAGAAGGAACCTCAATATTCTCGCGATCAGTTATCTTCTCAAACAAAGCAGAGTTTTCAACACACATACATCATAAACCTTGAAAATGTCTAATGGTTGCCTGAGTTCTCACCATGGTTGTTGAACTGCATCTTTCTGTTCAGAAAACTGTGAAAGGGTTACTTGGAAAAAAAAAATGAAAAGTTGAAACTATTTACTGATAGTTTAAAGTTATAAAGATGTAATTCTCTTCCTAAATTTTTGTGCATGTGTGGAATGTGGCAGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

mRNA sequence

ATGTATCTCGTCTCCTACCACTTCAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

Coding sequence (CDS)

ATGTATCTCGTCTCCTACCACTTCAGCGAGTGTTATGAAAAATTGGTGGGATTTCTCCTATATTGGTTTCGCATTTCAACTCCAAAATATGTGAGTACTCTTACTTCTACGTGGAAAGTTCAATTGTCGCGCTTCTTCCAGAAGATGCGACCGAAAGGGAAAATTGTTGGTACGGATATGCATGTCGCACTCAACACCACAACGAAGACCATGCTCGTAAGAGAAATCATGTGTGTCGTCCTACACGATCCCGATAATGATTAA

Protein sequence

MYLVSYHFSECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND

Homology

[Close]

BLAST of CsGy4G018740 vs. NCBI nr
Match: KGN54826.1 (hypothetical protein Csa_4G508535 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 45 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 88
          FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND
Sbjct: 20 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 62

[Close]

BLAST of CsGy4G018740 vs. NCBI nr
Match: OIW18239.1 (hypothetical protein TanjilG_06323 [Lupinus angustifolius])

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 10  ECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTK 69
           +C++KLV FLLYWFRIS PKY                     + KI G DMHV  +   K
Sbjct: 422 DCFQKLVSFLLYWFRISIPKY------------------KHQQEKIAGMDMHVGHSIIVK 474

Query: 70  TMLVREIMCVV 81
            MLV+ IMCVV
Sbjct: 482 NMLVKGIMCVV 474

[Close]

BLAST of CsGy4G018740 vs. TAIR10
Match: AT1G47570.1 (RING/U-box superfamily protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 0


Query: 9   SECYEKLVGFLLYWFRISTPK 30
           ++CY+KLVGFLLYWFRI+ P+
Sbjct: 401 NDCYDKLVGFLLYWFRITLPR 421

[Close]

BLAST of CsGy4G018740 vs. TrEMBL
Match: tr|A0A0A0L3W7|A0A0A0L3W7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508535 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.3e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 45 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 88
          FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND
Sbjct: 20 FFQKMRPKGKIVGTDMHVALNTTTKTMLVREIMCVVLHDPDND 62

[Close]

BLAST of CsGy4G018740 vs. TrEMBL
Match: tr|A0A1J7HZM1|A0A1J7HZM1_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06323 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-06
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 10  ECYEKLVGFLLYWFRISTPKYVSTLTSTWKVQLSRFFQKMRPKGKIVGTDMHVALNTTTK 69
           +C++KLV FLLYWFRIS PKY                     + KI G DMHV  +   K
Sbjct: 422 DCFQKLVSFLLYWFRISIPKY------------------KHQQEKIAGMDMHVGHSIIVK 474

Query: 70  TMLVREIMCVV 81
            MLV+ IMCVV
Sbjct: 482 NMLVKGIMCVV 474

The following BLAST results are available for this feature:

BLAST of CsGy4G018740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54826.1	8.0e-16	100.00	hypothetical protein Csa_4G508535 [Cucumis sativus]	[more]
OIW18239.1	1.3e-05	45.07	hypothetical protein TanjilG_06323 [Lupinus angustifolius]	[more]

BLAST of CsGy4G018740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47570.1	3.8e-04	71.43	RING/U-box superfamily protein	[more]

BLAST of CsGy4G018740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G018740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3W7\|A0A0A0L3W7_CUCSA	5.3e-16	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508535 PE=4 SV=1	[more]
tr\|A0A1J7HZM1\|A0A1J7HZM1_LUPAN	8.4e-06	45.07	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_06323 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G018740.1	CsGy4G018740.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G018740	CmaCh03G000160	Cucurbita maxima (Rimu)	cgybcmaB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G018740	Wild cucumber (PI 183967)	cgybcpiB170
CsGy4G018740	Silver-seed gourd	carcgybB0482
CsGy4G018740	Silver-seed gourd	carcgybB0521
CsGy4G018740	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G018740	Watermelon (97103) v2	cgybwmbB283
CsGy4G018740	Watermelon (97103) v2	cgybwmbB288
CsGy4G018740	Wax gourd	cgybwgoB375
CsGy4G018740	Cucurbita maxima (Rimu)	cgybcmaB564
CsGy4G018740	Cucurbita maxima (Rimu)	cgybcmaB570
CsGy4G018740	Cucurbita moschata (Rifu)	cgybcmoB504
CsGy4G018740	Cucurbita moschata (Rifu)	cgybcmoB511
CsGy4G018740	Cucurbita moschata (Rifu)	cgybcmoB539
CsGy4G018740	Cucurbita moschata (Rifu)	cgybcmoB544
CsGy4G018740	Cucurbita pepo (Zucchini)	cgybcpeB465
CsGy4G018740	Cucurbita pepo (Zucchini)	cgybcpeB525
CsGy4G018740	Cucumber (Chinese Long) v2	cgybcuB173
CsGy4G018740	Bottle gourd (USVL1VR-Ls)	cgyblsiB238
CsGy4G018740	Melon (DHL92) v3.5.1	cgybmeB285
CsGy4G018740	Melon (DHL92) v3.6.1	cgybmedB285
CsGy4G018740	Watermelon (Charleston Gray)	cgybwcgB283
CsGy4G018740	Watermelon (97103) v1	cgybwmB316