CsGy4G015700.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy4G015700.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 20404815 .. 20406941 (+)
Sequence length456
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAGTCCCGTCCAAAGACTCTCTTTGCTTTCATCACGGTCCTGCACAACAAATTGAACTTGTTAGAAAAAGTTTGGGAGGTTAAATTACAAATTTAGTCCCTAAACTTCAAGATTTAGGTTTATTTGATATATTTTTAGTACAATGGGGTGGGAGATTCCAACCAAGGAGCTTATGGACGTTAACACATTCATAGGCTATGTTGCTTTGGTAAATCTATTTAGTCTATGAACTTTCAGATTTTTTATATTCTGTGAATCTGCTTGACAAACTTAAAAGTCTAGGGAACTGTGATGCACATGATTGAAAGTTAAGAGACATTCTTGAAAGTTTATGAACAAAATTAACACAAACTTCATTGTTGAGAAACTAAACTTATAATGTAAGCATTTATTTATCGTGTGAATAAAAATGGCTAATTGCCAAAGAACATGAGTTGGAATTAGCATTACACTTGAAGAAAAAACTGCCGTAATTTAAATATAATTGTGATACAAAGGACAAGCACTAACCTGATGCAGACCCAATCTTCCCCTCGTTGTGTAGAAGTTCGCAATGCATATGTCTGGAGACATTGACGGAAGAATTTCTTCTACATTACTTATATTGCAGTTGTTCTTGATGAAGGCATGTGCATCTTTAAGTGCACGTTTAACAAGAAATGTAAATTGAGGAGGTATATCTGGTGGTTTATTACCATCCACAACCCGTTTGTTTTCATACCTTCTTGTTTGAGGATCCCAGTCCAATCCAAGACACATCATACGAAGCCTAAGTTTTGCTCCATCTTTATAACCAGGCTGGTAAAATCCCCCTGGGCCAATACCAAGATTTTGACAAGTTTTCACTATATTGATCTGCAACAAGAATAATGAATCCTCAATTACTAAACCCTAACTTCCATACGGAAAAATATAAGATATAAAAACACCATCCCGTCATTTAAGCAATGTAAGGCAACAAGGAGTAATATCAGCAAAGAGATGAAACTACAGGGCACCTCTTAACAATAGGCAACATTGGAAATTTTATAATTAGCAAAAGTGAAGTAGGTTAATGTCCATCATCCCAAGATGGGTATTCTAGAGAACAAAATGCCAATTCCCATTTCTAGTTCATATAAGTGTTGACAATTGAAGCAAGAGAATACCTGTTCACGTGGAGTGATGTAGTGCTTCAGTAAAACCATTCCAGGCCTCAACAGTCTATAATCTTTCACAGTGCCACCCTCTTTAACAACATAAATATTTCTATGTTTCACATTACCTCCTCCAGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTATCAAGGGACTGGAGCTTTGAGACAAACACTTCATTTTTCTTCCCAAAATGAATAGGAAGAGATGATTTATACTCCTGACAAGAATCGTTCAAAAATTCAAGCCTCTCTACTTGATATGATCTTGCATTACTCTTCAAATCTCTTTTGGACCCTAAATCTATCCGGCTTCTTCTAGTATTTTGTCTATGAACAGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATGTATGACATCTGAACTATTATCTCTGTCATGCAAATGTTCCTTGTCTCTCCCACAACCATAAGAACTACCACAACATGAAGAGTCAGGTAGTGCCTGAAGAATAACAAAATAGACTTGAAATCAAAATCAAATTAATAGAAATACAGTAGTAAGATTGAGTATAAGAGCAATTAGTAATTAACAGTGAATAATAATCTCAGTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

mRNA sequence

ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

Coding sequence (CDS)

ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

Protein sequence

MIEDTPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETTGKQISNGGSKGSELSVTTDSLGPVETHHNYKIWVHVPWDLDAQECFPHYSSHGYLLKWKTNPLVEIEANESRAGREMKKQGIEGDEVDWRRAMGEGEVYG
Homology
[Close]
BLAST of CsGy4G015700.1 vs. NCBI nr
Match: OAY78053.1 (hypothetical protein ACMD2_17786, partial [Ananas comosus])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 5  TPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETT 52
          TPWNI LD PP  RTSPDSSS +SA +  L +PYKNSA  P EKETT
Sbjct: 4  TPWNIFLDLPPNNRTSPDSSSILSAFAASLSTPYKNSAESPREKETT 50

[Close]
BLAST of CsGy4G015700.1 vs. TrEMBL
Match: tr|A0A199VM18|A0A199VM18_ANACO (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_17786 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 5  TPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETT 52
          TPWNI LD PP  RTSPDSSS +SA +  L +PYKNSA  P EKETT
Sbjct: 4  TPWNIFLDLPPNNRTSPDSSSILSAFAASLSTPYKNSAESPREKETT 50

The following BLAST results are available for this feature:
BLAST of CsGy4G015700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY78053.16.9e-0768.09hypothetical protein ACMD2_17786, partial [Ananas comosus][more]
BLAST of CsGy4G015700.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G015700.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G015700.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A199VM18|A0A199VM18_ANACO4.5e-0768.09Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_17786 PE=4... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy4G015700CsGy4G015700gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy4G015700.1CsGy4G015700.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G015700.1.exon.1CsGy4G015700.1.exon.1exon
CsGy4G015700.1.exon.2CsGy4G015700.1.exon.2exon
CsGy4G015700.1.exon.3CsGy4G015700.1.exon.3exon
CsGy4G015700.1.exon.4CsGy4G015700.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G015700.1.CDS.1CsGy4G015700.1.CDS.1CDS
CsGy4G015700.1.CDS.2CsGy4G015700.1.CDS.2CDS
CsGy4G015700.1.CDS.3CsGy4G015700.1.CDS.3CDS
CsGy4G015700.1.CDS.4CsGy4G015700.1.CDS.4CDS


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69