CsGy4G015700 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G015700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 20404815 .. 20406941 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAGTCCCGTCCAAAGACTCTCTTTGCTTTCATCACGGTCCTGCACAACAAATTGAACTTGTTAGAAAAAGTTTGGGAGGTTAAATTACAAATTTAGTCCCTAAACTTCAAGATTTAGGTTTATTTGATATATTTTTAGTACAATGGGGTGGGAGATTCCAACCAAGGAGCTTATGGACGTTAACACATTCATAGGCTATGTTGCTTTGGTAAATCTATTTAGTCTATGAACTTTCAGATTTTTTATATTCTGTGAATCTGCTTGACAAACTTAAAAGTCTAGGGAACTGTGATGCACATGATTGAAAGTTAAGAGACATTCTTGAAAGTTTATGAACAAAATTAACACAAACTTCATTGTTGAGAAACTAAACTTATAATGTAAGCATTTATTTATCGTGTGAATAAAAATGGCTAATTGCCAAAGAACATGAGTTGGAATTAGCATTACACTTGAAGAAAAAACTGCCGTAATTTAAATATAATTGTGATACAAAGGACAAGCACTAACCTGATGCAGACCCAATCTTCCCCTCGTTGTGTAGAAGTTCGCAATGCATATGTCTGGAGACATTGACGGAAGAATTTCTTCTACATTACTTATATTGCAGTTGTTCTTGATGAAGGCATGTGCATCTTTAAGTGCACGTTTAACAAGAAATGTAAATTGAGGAGGTATATCTGGTGGTTTATTACCATCCACAACCCGTTTGTTTTCATACCTTCTTGTTTGAGGATCCCAGTCCAATCCAAGACACATCATACGAAGCCTAAGTTTTGCTCCATCTTTATAACCAGGCTGGTAAAATCCCCCTGGGCCAATACCAAGATTTTGACAAGTTTTCACTATATTGATCTGCAACAAGAATAATGAATCCTCAATTACTAAACCCTAACTTCCATACGGAAAAATATAAGATATAAAAACACCATCCCGTCATTTAAGCAATGTAAGGCAACAAGGAGTAATATCAGCAAAGAGATGAAACTACAGGGCACCTCTTAACAATAGGCAACATTGGAAATTTTATAATTAGCAAAAGTGAAGTAGGTTAATGTCCATCATCCCAAGATGGGTATTCTAGAGAACAAAATGCCAATTCCCATTTCTAGTTCATATAAGTGTTGACAATTGAAGCAAGAGAATACCTGTTCACGTGGAGTGATGTAGTGCTTCAGTAAAACCATTCCAGGCCTCAACAGTCTATAATCTTTCACAGTGCCACCCTCTTTAACAACATAAATATTTCTATGTTTCACATTACCTCCTCCAGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTATCAAGGGACTGGAGCTTTGAGACAAACACTTCATTTTTCTTCCCAAAATGAATAGGAAGAGATGATTTATACTCCTGACAAGAATCGTTCAAAAATTCAAGCCTCTCTACTTGATATGATCTTGCATTACTCTTCAAATCTCTTTTGGACCCTAAATCTATCCGGCTTCTTCTAGTATTTTGTCTATGAACAGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATGTATGACATCTGAACTATTATCTCTGTCATGCAAATGTTCCTTGTCTCTCCCACAACCATAAGAACTACCACAACATGAAGAGTCAGGTAGTGCCTGAAGAATAACAAAATAGACTTGAAATCAAAATCAAATTAATAGAAATACAGTAGTAAGATTGAGTATAAGAGCAATTAGTAATTAACAGTGAATAATAATCTCAGTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

mRNA sequence

ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

Coding sequence (CDS)

ATGATTGAAGATACTCCATGGAATATATGTCTAGATTCGCCACCAAAAATTAGAACATCACCTGATTCCAGTTCAACCATCTCTGCTTTATCCACATTTCTTTTATCTCCATACAAGAATTCTGCTGTATTGCCTACAGAAAAGGAAACAACCGGTAAACAAATATCAAATGGTGGTTCAAAGGGAAGTGAATTGTCCGTAACTACAGATTCTTTGGGACCGGTAGAGACTCATCATAATTATAAGATTTGGGTTCACGTTCCTTGGGATTTAGATGCACAGGAATGCTTCCCACATTATTCCTCACATGGCTATTTGCTGAAGTGGAAAACGAATCCATTGGTTGAAATTGAAGCAAACGAAAGCCGCGCAGGCAGGGAAATGAAGAAGCAGGGAATAGAAGGCGACGAAGTTGATTGGAGGAGGGCGATGGGGGAAGGGGAAGTGTACGGATGA

Protein sequence

MIEDTPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETTGKQISNGGSKGSELSVTTDSLGPVETHHNYKIWVHVPWDLDAQECFPHYSSHGYLLKWKTNPLVEIEANESRAGREMKKQGIEGDEVDWRRAMGEGEVYG
Homology
[Close]
BLAST of CsGy4G015700 vs. NCBI nr
Match: OAY78053.1 (hypothetical protein ACMD2_17786, partial [Ananas comosus])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 5  TPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETT 52
          TPWNI LD PP  RTSPDSSS +SA +  L +PYKNSA  P EKETT
Sbjct: 4  TPWNIFLDLPPNNRTSPDSSSILSAFAASLSTPYKNSAESPREKETT 50

[Close]
BLAST of CsGy4G015700 vs. TrEMBL
Match: tr|A0A199VM18|A0A199VM18_ANACO (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_17786 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 5  TPWNICLDSPPKIRTSPDSSSTISALSTFLLSPYKNSAVLPTEKETT 52
          TPWNI LD PP  RTSPDSSS +SA +  L +PYKNSA  P EKETT
Sbjct: 4  TPWNIFLDLPPNNRTSPDSSSILSAFAASLSTPYKNSAESPREKETT 50

The following BLAST results are available for this feature:
BLAST of CsGy4G015700 vs. NCBI nr
Match NameE-valueIdentityDescription
OAY78053.16.9e-0768.09hypothetical protein ACMD2_17786, partial [Ananas comosus][more]
BLAST of CsGy4G015700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G015700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G015700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A199VM18|A0A199VM18_ANACO4.5e-0768.09Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_17786 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G015700.1CsGy4G015700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G015700Cucumber (Gy14) v2cgybcgybB083
CsGy4G015700Cucumber (Gy14) v2cgybcgybB130
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB490
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB509
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB550
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G015700Cucurbita maxima (Rimu)cgybcmaB567
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB458
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB461
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB480
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB525
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G015700Cucurbita moschata (Rifu)cgybcmoB541
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB483
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB514
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB520
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G015700Cucurbita pepo (Zucchini)cgybcpeB576
CsGy4G015700Cucumber (Chinese Long) v2cgybcuB162
CsGy4G015700Cucumber (Chinese Long) v2cgybcuB167
CsGy4G015700Cucumber (Chinese Long) v2cgybcuB184
CsGy4G015700Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G015700Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G015700Bottle gourd (USVL1VR-Ls)cgyblsiB262
CsGy4G015700Melon (DHL92) v3.5.1cgybmeB247
CsGy4G015700Melon (DHL92) v3.5.1cgybmeB248
CsGy4G015700Melon (DHL92) v3.5.1cgybmeB284
CsGy4G015700Melon (DHL92) v3.6.1cgybmedB246
CsGy4G015700Melon (DHL92) v3.6.1cgybmedB284
CsGy4G015700Watermelon (Charleston Gray)cgybwcgB252
CsGy4G015700Watermelon (Charleston Gray)cgybwcgB262
CsGy4G015700Watermelon (Charleston Gray)cgybwcgB282
CsGy4G015700Watermelon (97103) v1cgybwmB314
CsGy4G015700Watermelon (97103) v1cgybwmB270
CsGy4G015700Watermelon (97103) v1cgybwmB328
CsGy4G015700Wild cucumber (PI 183967)cgybcpiB165
CsGy4G015700Wild cucumber (PI 183967)cgybcpiB170
CsGy4G015700Wild cucumber (PI 183967)cgybcpiB187
CsGy4G015700Silver-seed gourdcarcgybB0019
CsGy4G015700Silver-seed gourdcarcgybB0172
CsGy4G015700Silver-seed gourdcarcgybB0277
CsGy4G015700Silver-seed gourdcarcgybB0298
CsGy4G015700Silver-seed gourdcarcgybB0626
CsGy4G015700Silver-seed gourdcarcgybB0985
CsGy4G015700Cucumber (Chinese Long) v3cgybcucB169
CsGy4G015700Cucumber (Chinese Long) v3cgybcucB171
CsGy4G015700Cucumber (Chinese Long) v3cgybcucB189
CsGy4G015700Watermelon (97103) v2cgybwmbB260
CsGy4G015700Watermelon (97103) v2cgybwmbB271
CsGy4G015700Watermelon (97103) v2cgybwmbB282
CsGy4G015700Wax gourdcgybwgoB348
CsGy4G015700Wax gourdcgybwgoB370
CsGy4G015700Wax gourdcgybwgoB374