CsGy4G015580.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G015580.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr4 : 20257866 .. 20260612 (+)
Sequence length	1631

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAAGTTTTCGTAAATCCAATAGCTCTTGTCAGTGAATCTGCTCTTGTTAGCCCTTGTACACCTTTCTGTTCTTCCTTTGAACATTCTCTTTTCATAGACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATGTTGATCACTTGATTGTTTGTCAACACATCCCATATCTGCAATTTCATGGTACGATACAAGAATTAACGTATAATTTTTTTTTTTTTGGCGATTTTGTAAATTGGGCATTAAATATTTTTTAAAAAAACTAACCCCATCTGTTGCTAAAACAATGAATTCGTCTTTTCTTGTGAGTTTTCTGTAAGAGACTTGAGGTGTTGAGATGAGACCGTAATCTTTGAGGCAAAAATCTCCTACGGATCTTGACATGGCTAGACCTGGATAATCTCCATCTGGTACCCATACTCTGAATATATCTGGATCTTCTTTTTCTGCTATGATTCGGCCTTGGAGATTCTTTATTCTTTCTGCTTCGCCTGATTCACATTGAAAACATAAAAATGAAGATAGCTTAATCTCCTAAATAGACGAACTAAAATATTCTTGCTAAATTGTTCATTCCATCGTTTCTATCATTTGTGTCATCTCAAATTGATAAGATAGAGTTGATTGATGTGGAATAAACAATGCCCATATGGAATATTTGGTTTCTGGTCAATTATTAATTAGCTCTGTTCATAACAATTTCATTTTTAGTTTTTTTTTTTTTTTTTTTGAAATTCTTTATTCTTTCTGCTTCGCCTGATTCACATTGAAAACATATGAATGAAGGAATGAACAATTGACCATATGGAATATGATGAAGATGATGGGATGACAGACGGATTGAATGGATAGATACCTAACCCAAGTAGATTAATGTCCTTAATGGATGGACTAAAATTTTCTTGCTAAATTGTTCAATCCTTTGTTGCTATCATTTTTGTTATCTAAAATTGATAAGATAGAGTTGATTGATGTGGATTTTAAAGAATACCCACATGGAATATTTGGTTTGTGGTCAACTGTTAACTGGATAGGAATATGTTGATGTTTGTCTCCTCTGGTGCAGAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAAAAATTGGAAAACATAGGATGTTATCTTCAAGGAAATTCACCTGTTTGATAATGGTCACGGCTGTTGTTCCACTACAGAAACAATCAATAGATGAATCCAAGCTGAGTTCTTGATCAACTTCTTTGAAAGATTCTTCAAGAGCAGCTTCCCATTTAGAAACCAACCGATTTCGTTGTTTTCCACCATTGTTATCTGGTTCAACACAAGCTTCAGAAACCACGCCATTTTCAGGTTGACATAGCTTCTTCTTGATTGATTTAGAGAGCTTCGTGGGTAGAACGTCTCGTGCATGGCGAGCAACCCTATGACCAGATGGACCATGACCATCAAAAACTCCACAAAAGATCAAATCTTTCTCTCCTGAGAAATCCTGTAAGTTTTGATTCAACCTTTTTTGAATACATAGATAGACACAAATCATATCCCCTTAATAAGATCATATCATAATGAATCTTTTTGCAGATCATCATCCATAATAATCAAATTAAGGGACAACAAACAAAATAGTATAGAGTTATTCCTTTGTTTTTACCTCCCAAACTGTCATTGCATCTTGATTGATTCCTTTTCTTCCTCGTTGAGTAAACATTGATGTGAACGTAGAGGATCCACGTAACCGAACAGTGGCGCCATCGTCACCACGTCGAACCTCTTCTCCATCATCACCATTGGAATCCCTATCATCTTTATCATAGGTCGTGTAGCCTCCATACATGTAATCTTTTGTACAACAAGCTCCCATTTCTGAGACGACCCTTCAACTAGGGCAATCTCAAAAAGGAATTTGACCCACCAAAAGAGATGAAATACCAACAAAATTTCTGAGAAAGAAAATGCATTAAAGTGAAGAAAGATTGCGGATTTCTCTGATTCTGAACCCAAAGGAAGCAGAAACAGAGAAGAGGAGGAGAGGAGAGAGAATTGAATTATAATACACAATGGAGAGAGAAATAATGGATTGAAGGAATGTTGTTTGGATGAGAATGTGGAATTTCAACGAACAGAATTATATTTAGAAAATCAAGGGTGGTGTCTTACCACCATGGGTCTCTTGTTGACATTTGTGTTTAGTGGGTTCGTTCTTCTTTCATTTCTTCAACCTATTAACTGCTTTATTATTATTATTTATTTCGGTTAAATTGTAAATTTAGCCTCATGTTTAGGAAAAGTTAGAATTCGGACTCTTTAGTTTATAGATTAAATTAATTCCTATAAATTGATAAGAGAATTAAAGAAAATTTTAGAACAAATTGCAAACACAACTCTTCAACTGTGTAGGTGCAACTTTCAATTGTAAAATTTGAGCCACTAATCTTCTACGAAAATTTAACTTTAGTTATATATTTTTTTTAAAATAA

mRNA sequence

ATGGCTCAAAACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAAAAATTGGAAAACATAGGATGTTATCTTCAAGGAAATTCACCTGTTTGATAATGGTCACGGCTGTTGTTCCACTACAGAAACAATCAATAGATGAATCCAAGCTGAGTTCTTGATCAACTTCTTTGAAAGATTCTTCAAGAGCAGCTTCCCATTTAGAAACCAACCGATTTCGTTGTTTTCCACCATTGTTATCTGGTTCAACACAAGCTTCAGAAACCACGCCATTTTCAGGTTGACATAGCTTCTTCTTGATTGATTTAGAGAGCTTCGTGGGTAGAACGTCTCGTGCATGGCGAGCAACCCTATGACCAGATGGACCATGACCATCAAAAACTCCACAAAAGATCAAATCTTTCTCTCCTGAGAAATCCTATCATCATCCATAATAATCAAATTAAGGGACAACAAACAAAATAGTATAGAGTTATTCCTTTGTTTTTACCTCCCAAACTGTCATTGCATCTTGATTGATTCCTTTTCTTCCTCGTTGAGTAAACATTGATGTGAACGTAGAGGATCCACGTAACCGAACAGTGGCGCCATCGTCACCACGTCGAACCTCTTCTCCATCATCACCATTGGAATCCCTATCATCTTTATCATAGGTCGTGTAGCCTCCATACATGTAATCTTTTGTACAACAAGCTCCCATTTCTGAGACGACCCTTCAACTAGGGCAATCTCAAAAAGGAATTTGACCCACCAAAAGAGATGAAATACCAACAAAATTTCTGAGAAAGAAAATGCATTAAAGTGAAGAAAGATTGCGGATTTCTCTGATTCTGAACCCAAAGGAAGCAGAAACAGAGAAGAGGAGGAGAGGAGAGAGAATTGAATTATAATACACAATGGAGAGAGAAATAATGGATTGAAGGAATGTTGTTTGGATGAGAATGTGGAATTTCAACGAACAGAATTATATTTAGAAAATCAAGGGTGGTGTCTTACCACCATGGGTCTCTTGTTGACATTTGTGTTTAGTGGGTTCGTTCTTCTTTCATTTCTTCAACCTATTAACTGCTTTATTATTATTATTTATTTCGGTTAAATTGTAAATTTAGCCTCATGTTTAGGAAAAGTTAGAATTCGGACTCTTTAGTTTATAGATTAAATTAATTCCTATAAATTGATAAGAGAATTAAAGAAAATTTTAGAACAAATTGCAAACACAACTCTTCAACTGTGTAGGTGCAACTTTCAATTGTAAAATTTGAGCCACTAATCTTCTACGAAAATTTAACTTTAGTTATATATTTTTTTTAAAATAA

Coding sequence (CDS)

ATGGCTCAAAACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAA

Protein sequence

MAQNPPSTSSSLTPLFLSTPIDLQLLETASSGWLLTFLLPTLVIDFVNSGGFLKNKQITAQSSIIDPGNRRFHSRTASFTTNLAAMDLFLTEATIEPPGSHLRLQPPNALPDDQNGQGIE

Homology

[Close]

BLAST of CsGy4G015580.1 vs. NCBI nr
Match: XP_022925086.1 (uncharacterized protein LOC111432437 [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 21 IDLQLLETASSGWLLTFLLPTLVIDFVNSGGFLKNKQITAQSSIIDPGNRRFHSRTASFT 80
          +DLQLLETASSGWLL    PT VID +++GGFLKNKQIT QSSI++P N RFHSR ASFT
Sbjct: 1  MDLQLLETASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60

Query: 81 TNLAAMDLFLTEATI 96
          TN AAMD F  EAT+
Sbjct: 61 TNFAAMDRFFAEATM 75

The following BLAST results are available for this feature:

BLAST of CsGy4G015580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925086.1	1.9e-20	72.00	uncharacterized protein LOC111432437 [Cucurbita moschata]	[more]

BLAST of CsGy4G015580.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G015580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G015580.1 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G015580	CsGy4G015580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G015580.1	CsGy4G015580.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G015580.1.exon.1	CsGy4G015580.1.exon.1	exon
CsGy4G015580.1.exon.2	CsGy4G015580.1.exon.2	exon
CsGy4G015580.1.exon.3	CsGy4G015580.1.exon.3	exon
CsGy4G015580.1.exon.4	CsGy4G015580.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G015580.1.CDS.1	CsGy4G015580.1.CDS.1	CDS
CsGy4G015580.1.CDS.2	CsGy4G015580.1.CDS.2	CDS
CsGy4G015580.1.CDS.3	CsGy4G015580.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G015580.1.three_prime_UTR.1	CsGy4G015580.1.three_prime_UTR.1	three_prime_UTR
CsGy4G015580.1.three_prime_UTR.2	CsGy4G015580.1.three_prime_UTR.2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..120