CsGy4G015580 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G015580
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr4 : 20257866 .. 20260612 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAAGTTTTCGTAAATCCAATAGCTCTTGTCAGTGAATCTGCTCTTGTTAGCCCTTGTACACCTTTCTGTTCTTCCTTTGAACATTCTCTTTTCATAGACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATGTTGATCACTTGATTGTTTGTCAACACATCCCATATCTGCAATTTCATGGTACGATACAAGAATTAACGTATAATTTTTTTTTTTTTGGCGATTTTGTAAATTGGGCATTAAATATTTTTTAAAAAAACTAACCCCATCTGTTGCTAAAACAATGAATTCGTCTTTTCTTGTGAGTTTTCTGTAAGAGACTTGAGGTGTTGAGATGAGACCGTAATCTTTGAGGCAAAAATCTCCTACGGATCTTGACATGGCTAGACCTGGATAATCTCCATCTGGTACCCATACTCTGAATATATCTGGATCTTCTTTTTCTGCTATGATTCGGCCTTGGAGATTCTTTATTCTTTCTGCTTCGCCTGATTCACATTGAAAACATAAAAATGAAGATAGCTTAATCTCCTAAATAGACGAACTAAAATATTCTTGCTAAATTGTTCATTCCATCGTTTCTATCATTTGTGTCATCTCAAATTGATAAGATAGAGTTGATTGATGTGGAATAAACAATGCCCATATGGAATATTTGGTTTCTGGTCAATTATTAATTAGCTCTGTTCATAACAATTTCATTTTTAGTTTTTTTTTTTTTTTTTTTGAAATTCTTTATTCTTTCTGCTTCGCCTGATTCACATTGAAAACATATGAATGAAGGAATGAACAATTGACCATATGGAATATGATGAAGATGATGGGATGACAGACGGATTGAATGGATAGATACCTAACCCAAGTAGATTAATGTCCTTAATGGATGGACTAAAATTTTCTTGCTAAATTGTTCAATCCTTTGTTGCTATCATTTTTGTTATCTAAAATTGATAAGATAGAGTTGATTGATGTGGATTTTAAAGAATACCCACATGGAATATTTGGTTTGTGGTCAACTGTTAACTGGATAGGAATATGTTGATGTTTGTCTCCTCTGGTGCAGAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAAAAATTGGAAAACATAGGATGTTATCTTCAAGGAAATTCACCTGTTTGATAATGGTCACGGCTGTTGTTCCACTACAGAAACAATCAATAGATGAATCCAAGCTGAGTTCTTGATCAACTTCTTTGAAAGATTCTTCAAGAGCAGCTTCCCATTTAGAAACCAACCGATTTCGTTGTTTTCCACCATTGTTATCTGGTTCAACACAAGCTTCAGAAACCACGCCATTTTCAGGTTGACATAGCTTCTTCTTGATTGATTTAGAGAGCTTCGTGGGTAGAACGTCTCGTGCATGGCGAGCAACCCTATGACCAGATGGACCATGACCATCAAAAACTCCACAAAAGATCAAATCTTTCTCTCCTGAGAAATCCTGTAAGTTTTGATTCAACCTTTTTTGAATACATAGATAGACACAAATCATATCCCCTTAATAAGATCATATCATAATGAATCTTTTTGCAGATCATCATCCATAATAATCAAATTAAGGGACAACAAACAAAATAGTATAGAGTTATTCCTTTGTTTTTACCTCCCAAACTGTCATTGCATCTTGATTGATTCCTTTTCTTCCTCGTTGAGTAAACATTGATGTGAACGTAGAGGATCCACGTAACCGAACAGTGGCGCCATCGTCACCACGTCGAACCTCTTCTCCATCATCACCATTGGAATCCCTATCATCTTTATCATAGGTCGTGTAGCCTCCATACATGTAATCTTTTGTACAACAAGCTCCCATTTCTGAGACGACCCTTCAACTAGGGCAATCTCAAAAAGGAATTTGACCCACCAAAAGAGATGAAATACCAACAAAATTTCTGAGAAAGAAAATGCATTAAAGTGAAGAAAGATTGCGGATTTCTCTGATTCTGAACCCAAAGGAAGCAGAAACAGAGAAGAGGAGGAGAGGAGAGAGAATTGAATTATAATACACAATGGAGAGAGAAATAATGGATTGAAGGAATGTTGTTTGGATGAGAATGTGGAATTTCAACGAACAGAATTATATTTAGAAAATCAAGGGTGGTGTCTTACCACCATGGGTCTCTTGTTGACATTTGTGTTTAGTGGGTTCGTTCTTCTTTCATTTCTTCAACCTATTAACTGCTTTATTATTATTATTTATTTCGGTTAAATTGTAAATTTAGCCTCATGTTTAGGAAAAGTTAGAATTCGGACTCTTTAGTTTATAGATTAAATTAATTCCTATAAATTGATAAGAGAATTAAAGAAAATTTTAGAACAAATTGCAAACACAACTCTTCAACTGTGTAGGTGCAACTTTCAATTGTAAAATTTGAGCCACTAATCTTCTACGAAAATTTAACTTTAGTTATATATTTTTTTTAAAATAA

mRNA sequence

ATGGCTCAAAACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAAAAATTGGAAAACATAGGATGTTATCTTCAAGGAAATTCACCTGTTTGATAATGGTCACGGCTGTTGTTCCACTACAGAAACAATCAATAGATGAATCCAAGCTGAGTTCTTGATCAACTTCTTTGAAAGATTCTTCAAGAGCAGCTTCCCATTTAGAAACCAACCGATTTCGTTGTTTTCCACCATTGTTATCTGGTTCAACACAAGCTTCAGAAACCACGCCATTTTCAGGTTGACATAGCTTCTTCTTGATTGATTTAGAGAGCTTCGTGGGTAGAACGTCTCGTGCATGGCGAGCAACCCTATGACCAGATGGACCATGACCATCAAAAACTCCACAAAAGATCAAATCTTTCTCTCCTGAGAAATCCTATCATCATCCATAATAATCAAATTAAGGGACAACAAACAAAATAGTATAGAGTTATTCCTTTGTTTTTACCTCCCAAACTGTCATTGCATCTTGATTGATTCCTTTTCTTCCTCGTTGAGTAAACATTGATGTGAACGTAGAGGATCCACGTAACCGAACAGTGGCGCCATCGTCACCACGTCGAACCTCTTCTCCATCATCACCATTGGAATCCCTATCATCTTTATCATAGGTCGTGTAGCCTCCATACATGTAATCTTTTGTACAACAAGCTCCCATTTCTGAGACGACCCTTCAACTAGGGCAATCTCAAAAAGGAATTTGACCCACCAAAAGAGATGAAATACCAACAAAATTTCTGAGAAAGAAAATGCATTAAAGTGAAGAAAGATTGCGGATTTCTCTGATTCTGAACCCAAAGGAAGCAGAAACAGAGAAGAGGAGGAGAGGAGAGAGAATTGAATTATAATACACAATGGAGAGAGAAATAATGGATTGAAGGAATGTTGTTTGGATGAGAATGTGGAATTTCAACGAACAGAATTATATTTAGAAAATCAAGGGTGGTGTCTTACCACCATGGGTCTCTTGTTGACATTTGTGTTTAGTGGGTTCGTTCTTCTTTCATTTCTTCAACCTATTAACTGCTTTATTATTATTATTTATTTCGGTTAAATTGTAAATTTAGCCTCATGTTTAGGAAAAGTTAGAATTCGGACTCTTTAGTTTATAGATTAAATTAATTCCTATAAATTGATAAGAGAATTAAAGAAAATTTTAGAACAAATTGCAAACACAACTCTTCAACTGTGTAGGTGCAACTTTCAATTGTAAAATTTGAGCCACTAATCTTCTACGAAAATTTAACTTTAGTTATATATTTTTTTTAAAATAA

Coding sequence (CDS)

ATGGCTCAAAACCCACCTTCAACTTCTTCTTCTCTTACTCCTCTTTTTCTATCAACCCCCATTGATCTACAACTTCTTGAAACTGCAAGTTCTGGATGGCTTCTCACGTTCCTCCTTCCCACACTCGTCATTGATTTCGTTAATAGTGGTGGGTTCTTGAAGAACAAACAAATCACTGCACAGTCGTCGATCATTGACCCTGGAAACCGCCGTTTCCATTCACGAACTGCTAGTTTCACTACTAATTTAGCTGCCATGGATCTGTTCCTTACTGAAGCAACTATAGAACCGCCCGGGAGTCACCTACGTTTGCAACCACCAAATGCTCTCCCTGATGATCAAAATGGTCAAGGGATTGAATAA

Protein sequence

MAQNPPSTSSSLTPLFLSTPIDLQLLETASSGWLLTFLLPTLVIDFVNSGGFLKNKQITAQSSIIDPGNRRFHSRTASFTTNLAAMDLFLTEATIEPPGSHLRLQPPNALPDDQNGQGIE
Homology
[Close]
BLAST of CsGy4G015580 vs. NCBI nr
Match: XP_022925086.1 (uncharacterized protein LOC111432437 [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 21 IDLQLLETASSGWLLTFLLPTLVIDFVNSGGFLKNKQITAQSSIIDPGNRRFHSRTASFT 80
          +DLQLLETASSGWLL    PT VID +++GGFLKNKQIT QSSI++P N RFHSR ASFT
Sbjct: 1  MDLQLLETASSGWLLMLRRPTFVIDLLSNGGFLKNKQITVQSSIVNPINLRFHSRAASFT 60

Query: 81 TNLAAMDLFLTEATI 96
          TN AAMD F  EAT+
Sbjct: 61 TNFAAMDRFFAEATM 75

The following BLAST results are available for this feature:
BLAST of CsGy4G015580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022925086.11.9e-2072.00uncharacterized protein LOC111432437 [Cucurbita moschata][more]
BLAST of CsGy4G015580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G015580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G015580 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G015580.1CsGy4G015580.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..120

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G015580CmaCh07G012400Cucurbita maxima (Rimu)cgybcmaB567
CsGy4G015580CmoCh07G012860Cucurbita moschata (Rifu)cgybcmoB541
CsGy4G015580Cp4.1LG19g01310Cucurbita pepo (Zucchini)cgybcpeB520
CsGy4G015580Carg12673Silver-seed gourdcarcgybB0298
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G015580Cucumber (Gy14) v2cgybcgybB083
CsGy4G015580Cucumber (Gy14) v2cgybcgybB130
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB490
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB509
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB550
CsGy4G015580Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB458
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB461
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB480
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB525
CsGy4G015580Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G015580Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G015580Cucurbita pepo (Zucchini)cgybcpeB483
CsGy4G015580Cucurbita pepo (Zucchini)cgybcpeB514
CsGy4G015580Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G015580Cucurbita pepo (Zucchini)cgybcpeB576
CsGy4G015580Cucumber (Chinese Long) v2cgybcuB162
CsGy4G015580Cucumber (Chinese Long) v2cgybcuB167
CsGy4G015580Cucumber (Chinese Long) v2cgybcuB184
CsGy4G015580Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G015580Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G015580Bottle gourd (USVL1VR-Ls)cgyblsiB262
CsGy4G015580Melon (DHL92) v3.5.1cgybmeB247
CsGy4G015580Melon (DHL92) v3.5.1cgybmeB248
CsGy4G015580Melon (DHL92) v3.5.1cgybmeB284
CsGy4G015580Melon (DHL92) v3.6.1cgybmedB246
CsGy4G015580Melon (DHL92) v3.6.1cgybmedB284
CsGy4G015580Watermelon (Charleston Gray)cgybwcgB252
CsGy4G015580Watermelon (Charleston Gray)cgybwcgB262
CsGy4G015580Watermelon (Charleston Gray)cgybwcgB282
CsGy4G015580Watermelon (97103) v1cgybwmB314
CsGy4G015580Watermelon (97103) v1cgybwmB270
CsGy4G015580Watermelon (97103) v1cgybwmB328
CsGy4G015580Wild cucumber (PI 183967)cgybcpiB165
CsGy4G015580Wild cucumber (PI 183967)cgybcpiB170
CsGy4G015580Wild cucumber (PI 183967)cgybcpiB187
CsGy4G015580Silver-seed gourdcarcgybB0172
CsGy4G015580Silver-seed gourdcarcgybB0277
CsGy4G015580Silver-seed gourdcarcgybB0561
CsGy4G015580Silver-seed gourdcarcgybB0985
CsGy4G015580Cucumber (Chinese Long) v3cgybcucB169
CsGy4G015580Cucumber (Chinese Long) v3cgybcucB171
CsGy4G015580Cucumber (Chinese Long) v3cgybcucB174
CsGy4G015580Cucumber (Chinese Long) v3cgybcucB189
CsGy4G015580Watermelon (97103) v2cgybwmbB260
CsGy4G015580Watermelon (97103) v2cgybwmbB271
CsGy4G015580Watermelon (97103) v2cgybwmbB282
CsGy4G015580Wax gourdcgybwgoB348
CsGy4G015580Wax gourdcgybwgoB370
CsGy4G015580Wax gourdcgybwgoB374