CsGy4G011390.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy4G011390.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 10967102 .. 10967539 (-)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGTTTCACGTATCTGACTTTGAATCCATCAAACCATTGTTGTTGACTTTGGCTCCTCAAGTGAAGACAATGTGATTTTGTCTAATATTCTCAAATGAAAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCAT

mRNA sequence

TGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCAT

Coding sequence (CDS)

TGTCGCTTCCATCCATGCAACTTCTCCAACACAATCAACCAAAACCTCTACGACATCATCATCTTGTCGTGCCAGGCCTCAACAACTATCTCCCCTCATAAAGGAACACCGCTGGACAAATGCAAGAAACCCTTTGTCTCGGGTTTATCTAACGCTGACAATCTCTATGAAGCCCTATTCGGTACCTTCTTTGGTCCACGACATGCCCTCCCCATGGGCTCTGTTCCGTCATCCTCATGGCTTGGCTCATCGGCTCCTCGAAAACTACTTAAAACCATTATTGAAGATCTATTCACTGAGTTCGCTCAAGATCTAGAAGGACTCTCCTCCAGGCTTCAT

Protein sequence

CRFHPCNFSNTINQNLYDIIILSCQASTTISPHKGTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTIIEDLFTEFAQDLEGLSSRLH
Homology
[Close]
BLAST of CsGy4G011390.1 vs. NCBI nr
Match: KGN54004.1 (hypothetical protein Csa_4G256930 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 7.4e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 35  GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 94
           GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26  GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 95  EDLFTEFAQDLEGLSSRLH 114
           EDLFTEFAQDLEGLSSRLH
Sbjct: 86  EDLFTEFAQDLEGLSSRLH 104

[Close]
BLAST of CsGy4G011390.1 vs. TrEMBL
Match: tr|A0A0A0KYY8|A0A0A0KYY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 35  GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 94
           GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII
Sbjct: 26  GTPLDKCKKPFVSGLSNADNLYEALFGTFFGPRHALPMGSVPSSSWLGSSAPRKLLKTII 85

Query: 95  EDLFTEFAQDLEGLSSRLH 114
           EDLFTEFAQDLEGLSSRLH
Sbjct: 86  EDLFTEFAQDLEGLSSRLH 104

The following BLAST results are available for this feature:
BLAST of CsGy4G011390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54004.17.4e-38100.00hypothetical protein Csa_4G256930 [Cucumis sativus][more]
BLAST of CsGy4G011390.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G011390.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G011390.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYY8|A0A0A0KYY8_CUCSA4.9e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G256930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy4G011390CsGy4G011390gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G011390.1.CDS.2CsGy4G011390.1.CDS.2CDS
CsGy4G011390.1.CDS.1CsGy4G011390.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy4G011390.1.exon.2CsGy4G011390.1.exon.2exon
CsGy4G011390.1.exon.1CsGy4G011390.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy4G011390.1CsGy4G011390.1-proteinpolypeptide