CsGy4G006310.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G006310.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	hypothetical protein
Location	Chr4 : 4561757 .. 4562185 (-)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

mRNA sequence

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Coding sequence (CDS)

ATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Protein sequence

MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN

Homology

[Close]

BLAST of CsGy4G006310.1 vs. NCBI nr
Match: XP_011653217.1 (PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus] >KGN53407.1 hypothetical protein Csa_4G052080 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 8.9e-57
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 143
           GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G006310.1 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 6.8e-49
Identity = 125/142 (88.03%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP S   PQHQP EIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIA   XXXXXXXXXXXXX  VRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61  KKRVRFADTEPVIIA--IXXXXXXXXXXXXXXXVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 143
           GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G006310.1 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 96/139 (69.06%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK    P S    Q +P EI+KV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKP-EIEKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIA                KVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIA--IDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 140
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 134

[Close]

BLAST of CsGy4G006310.1 vs. NCBI nr
Match: XP_023522331.1 (uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 95/139 (68.35%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK      S   P     EI+KV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIA                KVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIA--IDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 140
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 132

[Close]

BLAST of CsGy4G006310.1 vs. NCBI nr
Match: XP_023552096.1 (uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 6.6e-36
Identity = 94/139 (67.63%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MI NLISSLNKKLQAV+IS+RC+RTKKT  VYR +++KK      S   P     EI+KV
Sbjct: 1   MIGNLISSLNKKLQAVDISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIA                KVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIA--IDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSL 140
           GDVASELMRIP  RV SS+
Sbjct: 121 GDVASELMRIPAARVSSSM 132

[Close]

BLAST of CsGy4G006310.1 vs. TAIR10
Match: AT4G23880.1 (unknown protein)

HSP 1 Score: 43.9 bits (102), Expect = 9.6e-05
Identity = 17/49 (34.69%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 92  KVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLV 141
           +VVR+ +K+TK EA R+LS+C N  VL+   +  ++  +P  +++ ++V
Sbjct: 132 EVVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAMV 180

[Close]

BLAST of CsGy4G006310.1 vs. TrEMBL
Match: tr|A0A0A0KYE1|A0A0A0KYE1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.9e-57
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF
Sbjct: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 143
           GDVASELMRIPPTRVRSSLVAN
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CsGy4G006310.1 vs. TrEMBL
Match: tr|A0A1S3BS40|A0A1S3BS40_CUCME (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.5e-49
Identity = 125/142 (88.03%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MISNLISSLNKKLQAVEIS+RCKRTKKT YVYRD+LTKK HSPP S   PQHQP EIKKV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEF 120
           KKRVRFADTEPVIIA   XXXXXXXXXXXXX  VRITVKLTKQEANRMLSRCSN GVLEF
Sbjct: 61  KKRVRFADTEPVIIA--IXXXXXXXXXXXXXXXVRITVKLTKQEANRMLSRCSNDGVLEF 120

Query: 121 GDVASELMRIPPTRVRSSLVAN 143
           GDVASEL+RIPPTRV SSLVAN
Sbjct: 121 GDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CsGy4G006310.1 vs. TrEMBL
Match: tr|A0A0A0KZ22|A0A0A0KZ22_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 72/117 (61.54%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 26  KKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKVKKRVRFADTEPVIIAXXXXXXXXXX 85
           KK  YVYRD+LTKKNHSPP  XXX                F D          XXXXXXX
Sbjct: 2   KKATYVYRDDLTKKNHSPPXXXXXXXXXXXXXXXXXXXXXFVD----------XXXXXXX 61

Query: 86  XXXXXXKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN 143
           XXXXXX    I VKL KQEAN+MLSRC NGGVLEFGDV  ELMRIPPTRV SSLV +
Sbjct: 62  XXXXXXXXXXIMVKLKKQEANQMLSRCFNGGVLEFGDVTFELMRIPPTRVSSSLVTS 108

[Close]

BLAST of CsGy4G006310.1 vs. TrEMBL
Match: tr|K7KRX3|K7KRX3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102662341 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-11
Identity = 54/136 (39.71%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MI  + + LN K  A    S+ +  + T  VYRD LTKK                  K V
Sbjct: 1   MIRTIFACLNGK--ASHKKSKLEPLEVTKPVYRDELTKKQRLR--------------KAV 60

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKV-VRITVKLTKQEANRMLSRCSNGGVLE 120
           KK VRFA++EP I+                 K  +R+ +KLTK+EA R+LS+C+NGG+LE
Sbjct: 61  KKTVRFAESEPTILGEDSEKTRCVSGNEVGGKEGIRVRIKLTKEEAARLLSKCNNGGILE 120

Query: 121 FGDVASELMRIPPTRV 136
           F DVA EL+ IP  RV
Sbjct: 121 FEDVARELVLIPVNRV 120

[Close]

BLAST of CsGy4G006310.1 vs. TrEMBL
Match: tr|A0A0R0IME2|A0A0R0IME2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G023200 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 52/140 (37.14%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSXXXPQHQPEEIKKV 60
           MI  + +  N K+      +  +  + T  VYRD LTKK   PP             K V
Sbjct: 55  MIRTIFACFNGKVS--HKKAEVEPLEVTKPVYRDELTKK--QPPR------------KTV 114

Query: 61  KKRVRFADTEPVIIAXXXXXXXXXXXXXXXXKV-----VRITVKLTKQEANRMLSRCSNG 120
           KK VRFA++EP I+                 +V     +R+ +KLTK+EA R+LS+C+NG
Sbjct: 115 KKTVRFAESEPTILGEDSEKEFEKTRWGSGNEVGEKEGMRVRIKLTKEEAARLLSKCNNG 174

Query: 121 GVLEFGDVASELMRIPPTRV 136
           G+L+F DVA EL+ IP  RV
Sbjct: 175 GILQFKDVAHELVLIPVNRV 178

The following BLAST results are available for this feature:

BLAST of CsGy4G006310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653217.1	8.9e-57	100.00	PREDICTED: uncharacterized protein LOC105435188 [Cucumis sativus] >KGN53407.1 hy...	[more]
XP_008451951.1	6.8e-49	88.03	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo]	[more]
XP_022985430.1	3.0e-36	69.06	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]
XP_023522331.1	3.0e-36	68.35	uncharacterized protein LOC111786247 [Cucurbita pepo subsp. pepo]	[more]
XP_023552096.1	6.6e-36	67.63	uncharacterized protein LOC111809864 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G006310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23880.1	9.6e-05	34.69	unknown protein	[more]

BLAST of CsGy4G006310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G006310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYE1\|A0A0A0KYE1_CUCSA	5.9e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
tr\|A0A1S3BS40\|A0A1S3BS40_CUCME	4.5e-49	88.03	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
tr\|A0A0A0KZ22\|A0A0A0KZ22_CUCSA	3.3e-15	61.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091930 PE=4 SV=1	[more]
tr\|K7KRX3\|K7KRX3_SOYBN	3.7e-11	39.71	Uncharacterized protein OS=Glycine max OX=3847 GN=102662341 PE=4 SV=1	[more]
tr\|A0A0R0IME2\|A0A0R0IME2_SOYBN	7.1e-10	37.14	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G023200 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G006310	CsGy4G006310	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G006310.1.CDS.1	CsGy4G006310.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G006310.1.exon.1	CsGy4G006310.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G006310.1	CsGy4G006310.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..61
None	No IPR available	PANTHER	PTHR36782	FAMILY NOT NAMED	coord: 1..136