CsGy3G025340.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G025340.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionrho guanine nucleotide exchange factor 8
LocationChr3 : 25845220 .. 25846412 (-)
Sequence length246
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGTATGTGTCTTCACCTTCCTCAAGTTGCTGGAGATTCCACAACCTCTAGTACCCAATCCCTTTCTCCTTTGCCTCCTATTTCTAATTGCCACCAATCCACGCTGACCCATTAATTCTCTTAATTTTTTGTTTTTGTTTGTACTGATCCTCTTAATTATTAGATTTCATGAAAATTTCAACAGGGTTTCTGAATTTTCCATTACCTATTTATTACTATTTTTTTAAATATCTTATATTAATGTTTCTTGTGGGTGGCTATTGGTGTGATCATGTCGAAATAAGTTCTGATTTTGCTATTGGTACTTTCTGGTCTTGTCTTAATCAAAGGTTGTTACCCTCTTTCGTTATTCTTGTGGGGTACAATGTCCCTACAGTGATTGGATTTATTAGAACTTAGTTTTTGATTTGTAAGAAGGCTATTTCTTCTCGGGTTCTGTCGTTTTTACTCTTTATGTTATATTGCTATTATCTTTTCTTTTGCTATCTTTTAACCTTTGATCAAGTGGTGGGTTGTCTGTTTGGTGAGACTGTTGTTTTGTTTTGTTATAAGTGTAGACTGGGTAGTGGTTTTCTTTTAGTACTTTTGATCATTTGTATAACATAAAACTGCTATTTTGAACTGCCTTTAGTATTTTAGTAAGATTTGATGTTAATATTTAATCTCTCAGCCATTAAATTAAAAGAAAAAACTTAACAAAATTTAGCAGCCGTTATTTCATTCCACTTTTTTCCACTTAAACCCTTCATTATTTGTTTCTTAGACATGCACCCCACAATCTATTCTATCACAAAGAAAAAAGAAAAAAGAAAAACCCCAGTATTTTTCTCTTCTCTCTTCACAAATCCAAAAGGCCAAAACCCACAAAAACCTTCTAAATCAGAAGAAAAAGGAAAACCCCATTTCTTGTTTGCTCAAATACATTACAATTTTTTTGTTTTTGTTGAAGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

mRNA sequence

ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

Coding sequence (CDS)

ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

Protein sequence

MEEGVKMALGNGKIGFSKWLELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRANINIDPNIEKY
Homology
[Close]
BLAST of CsGy3G025340.1 vs. NCBI nr
Match: XP_008458416.1 (PREDICTED: rho guanine nucleotide exchange factor 8 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          +EL   Q H SLILESGQEGSRDS E QKI WALG+TKGPVSCLDAHGIRA
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGETKGPVSCLDAHGIRA 72

[Close]
BLAST of CsGy3G025340.1 vs. NCBI nr
Match: XP_011648654.1 (PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus] >KGN60612.1 hypothetical protein Csa_2G004130 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAH-GIRA-NINIDPN 78
          +EL   Q H SLILESGQEGSRDS E QKI WALGDTKGPVSCLDAH GIRA  +   PN
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGDTKGPVSCLDAHGGIRARGLRCQPN 81

[Close]
BLAST of CsGy3G025340.1 vs. NCBI nr
Match: XP_023547329.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLILESGQE  GSRDS E Q+I W+L D KGPVSC D HGIRA
Sbjct: 18 FKRTVELPGRKTH-SLILESGQEGHGSRDSSESQRIGWSLSDNKGPVSCFDGHGIRA 73

[Close]
BLAST of CsGy3G025340.1 vs. NCBI nr
Match: XP_022946233.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLILESGQE  GSRDS E Q+I W+L D KG VSC D HGI A
Sbjct: 18 FKRTVELPGRKTH-SLILESGQEGHGSRDSSESQRIGWSLSDNKGSVSCFDGHGIGA 73

[Close]
BLAST of CsGy3G025340.1 vs. NCBI nr
Match: XP_022999470.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 8.2e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLI E GQE  GSRDS E Q+I WAL D K PVSC D HGI+A
Sbjct: 18 FKRTVELPGRKTH-SLISEGGQEGHGSRDSSESQRIGWALSDNKSPVSCFDGHGIKA 73

[Close]
BLAST of CsGy3G025340.1 vs. TrEMBL
Match: tr|A0A1S3C7X9|A0A1S3C7X9_CUCME (rho guanine nucleotide exchange factor 8 OS=Cucumis melo OX=3656 GN=LOC103497837 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          +EL   Q H SLILESGQEGSRDS E QKI WALG+TKGPVSCLDAHGIRA
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGETKGPVSCLDAHGIRA 72

[Close]
BLAST of CsGy3G025340.1 vs. TrEMBL
Match: tr|A0A0A0LIT3|A0A0A0LIT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAH-GIRA-NINIDPN 78
          +EL   Q H SLILESGQEGSRDS E QKI WALGDTKGPVSCLDAH GIRA  +   PN
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGDTKGPVSCLDAHGGIRARGLRCQPN 81

The following BLAST results are available for this feature:
BLAST of CsGy3G025340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458416.13.8e-1280.39PREDICTED: rho guanine nucleotide exchange factor 8 [Cucumis melo][more]
XP_011648654.11.9e-1173.33PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus] >KGN6... [more]
XP_023547329.11.1e-0863.16rho guanine nucleotide exchange factor 8-like [Cucurbita pepo subsp. pepo][more]
XP_022946233.16.3e-0759.65rho guanine nucleotide exchange factor 8-like [Cucurbita moschata][more]
XP_022999470.18.2e-0757.89rho guanine nucleotide exchange factor 8-like [Cucurbita maxima][more]
BLAST of CsGy3G025340.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G025340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G025340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C7X9|A0A1S3C7X9_CUCME2.5e-1280.39rho guanine nucleotide exchange factor 8 OS=Cucumis melo OX=3656 GN=LOC103497837... [more]
tr|A0A0A0LIT3|A0A0A0LIT3_CUCSA1.3e-1173.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065009 regulation of molecular function
cellular_component GO:0005575 cellular_component
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G025340CsGy3G025340gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G025340.1.CDS.2CsGy3G025340.1.CDS.2CDS
CsGy3G025340.1.CDS.1CsGy3G025340.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G025340.1.exon.2CsGy3G025340.1.exon.2exon
CsGy3G025340.1.exon.1CsGy3G025340.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G025340.1CsGy3G025340.1-proteinpolypeptide