CsGy3G025340 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G025340
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionrho guanine nucleotide exchange factor 8
LocationChr3 : 25845220 .. 25846412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGTATGTGTCTTCACCTTCCTCAAGTTGCTGGAGATTCCACAACCTCTAGTACCCAATCCCTTTCTCCTTTGCCTCCTATTTCTAATTGCCACCAATCCACGCTGACCCATTAATTCTCTTAATTTTTTGTTTTTGTTTGTACTGATCCTCTTAATTATTAGATTTCATGAAAATTTCAACAGGGTTTCTGAATTTTCCATTACCTATTTATTACTATTTTTTTAAATATCTTATATTAATGTTTCTTGTGGGTGGCTATTGGTGTGATCATGTCGAAATAAGTTCTGATTTTGCTATTGGTACTTTCTGGTCTTGTCTTAATCAAAGGTTGTTACCCTCTTTCGTTATTCTTGTGGGGTACAATGTCCCTACAGTGATTGGATTTATTAGAACTTAGTTTTTGATTTGTAAGAAGGCTATTTCTTCTCGGGTTCTGTCGTTTTTACTCTTTATGTTATATTGCTATTATCTTTTCTTTTGCTATCTTTTAACCTTTGATCAAGTGGTGGGTTGTCTGTTTGGTGAGACTGTTGTTTTGTTTTGTTATAAGTGTAGACTGGGTAGTGGTTTTCTTTTAGTACTTTTGATCATTTGTATAACATAAAACTGCTATTTTGAACTGCCTTTAGTATTTTAGTAAGATTTGATGTTAATATTTAATCTCTCAGCCATTAAATTAAAAGAAAAAACTTAACAAAATTTAGCAGCCGTTATTTCATTCCACTTTTTTCCACTTAAACCCTTCATTATTTGTTTCTTAGACATGCACCCCACAATCTATTCTATCACAAAGAAAAAAGAAAAAAGAAAAACCCCAGTATTTTTCTCTTCTCTCTTCACAAATCCAAAAGGCCAAAACCCACAAAAACCTTCTAAATCAGAAGAAAAAGGAAAACCCCATTTCTTGTTTGCTCAAATACATTACAATTTTTTTGTTTTTGTTGAAGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

mRNA sequence

ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

Coding sequence (CDS)

ATGGAGGAAGGTGTGAAGATGGCTCTTGGCAATGGAAAAATTGGATTCTCAAAATGGTTAGAGCTGTTCAGCAATCAAGATCATTATAGTTTGATTTTGGAGAGTGGACAAGAGGGTTCAAGAGATTCTTTTGAACTCCAAAAAATTGAATGGGCTTTGGGTGACACCAAAGGTCCTGTTTCTTGTCTCGATGCACATGGTATTAGAGCAAATATAAACATAGACCCAAATATTGAAAAATACTAA

Protein sequence

MEEGVKMALGNGKIGFSKWLELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRANINIDPNIEKY
Homology
[Close]
BLAST of CsGy3G025340 vs. NCBI nr
Match: XP_008458416.1 (PREDICTED: rho guanine nucleotide exchange factor 8 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          +EL   Q H SLILESGQEGSRDS E QKI WALG+TKGPVSCLDAHGIRA
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGETKGPVSCLDAHGIRA 72

[Close]
BLAST of CsGy3G025340 vs. NCBI nr
Match: XP_011648654.1 (PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus] >KGN60612.1 hypothetical protein Csa_2G004130 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAH-GIRA-NINIDPN 78
          +EL   Q H SLILESGQEGSRDS E QKI WALGDTKGPVSCLDAH GIRA  +   PN
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGDTKGPVSCLDAHGGIRARGLRCQPN 81

[Close]
BLAST of CsGy3G025340 vs. NCBI nr
Match: XP_023547329.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLILESGQE  GSRDS E Q+I W+L D KGPVSC D HGIRA
Sbjct: 18 FKRTVELPGRKTH-SLILESGQEGHGSRDSSESQRIGWSLSDNKGPVSCFDGHGIRA 73

[Close]
BLAST of CsGy3G025340 vs. NCBI nr
Match: XP_022946233.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLILESGQE  GSRDS E Q+I W+L D KG VSC D HGI A
Sbjct: 18 FKRTVELPGRKTH-SLILESGQEGHGSRDSSESQRIGWSLSDNKGSVSCFDGHGIGA 73

[Close]
BLAST of CsGy3G025340 vs. NCBI nr
Match: XP_022999470.1 (rho guanine nucleotide exchange factor 8-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 8.2e-07
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 16 FSKWLELFSNQDHYSLILESGQE--GSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          F + +EL   + H SLI E GQE  GSRDS E Q+I WAL D K PVSC D HGI+A
Sbjct: 18 FKRTVELPGRKTH-SLISEGGQEGHGSRDSSESQRIGWALSDNKSPVSCFDGHGIKA 73

[Close]
BLAST of CsGy3G025340 vs. TrEMBL
Match: tr|A0A1S3C7X9|A0A1S3C7X9_CUCME (rho guanine nucleotide exchange factor 8 OS=Cucumis melo OX=3656 GN=LOC103497837 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAHGIRA 71
          +EL   Q H SLILESGQEGSRDS E QKI WALG+TKGPVSCLDAHGIRA
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGETKGPVSCLDAHGIRA 72

[Close]
BLAST of CsGy3G025340 vs. TrEMBL
Match: tr|A0A0A0LIT3|A0A0A0LIT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004130 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 20 LELFSNQDHYSLILESGQEGSRDSFELQKIEWALGDTKGPVSCLDAH-GIRA-NINIDPN 78
          +EL   Q H SLILESGQEGSRDS E QKI WALGDTKGPVSCLDAH GIRA  +   PN
Sbjct: 23 VELPGRQAH-SLILESGQEGSRDSSEPQKIGWALGDTKGPVSCLDAHGGIRARGLRCQPN 81

The following BLAST results are available for this feature:
BLAST of CsGy3G025340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458416.13.8e-1280.39PREDICTED: rho guanine nucleotide exchange factor 8 [Cucumis melo][more]
XP_011648654.11.9e-1173.33PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus] >KGN6... [more]
XP_023547329.11.1e-0863.16rho guanine nucleotide exchange factor 8-like [Cucurbita pepo subsp. pepo][more]
XP_022946233.16.3e-0759.65rho guanine nucleotide exchange factor 8-like [Cucurbita moschata][more]
XP_022999470.18.2e-0757.89rho guanine nucleotide exchange factor 8-like [Cucurbita maxima][more]
BLAST of CsGy3G025340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G025340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G025340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C7X9|A0A1S3C7X9_CUCME2.5e-1280.39rho guanine nucleotide exchange factor 8 OS=Cucumis melo OX=3656 GN=LOC103497837... [more]
tr|A0A0A0LIT3|A0A0A0LIT3_CUCSA1.3e-1173.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004130 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0065009 regulation of molecular function
cellular_component GO:0005575 cellular_component
molecular_function GO:0005089 Rho guanyl-nucleotide exchange factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G025340.1CsGy3G025340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G025340Cucumber (Gy14) v2cgybcgybB052
CsGy3G025340Cucumber (Gy14) v2cgybcgybB082
CsGy3G025340Cucumber (Gy14) v2cgybcgybB116
CsGy3G025340Cucurbita maxima (Rimu)cgybcmaB314
CsGy3G025340Cucurbita maxima (Rimu)cgybcmaB375
CsGy3G025340Cucurbita maxima (Rimu)cgybcmaB396
CsGy3G025340Cucurbita maxima (Rimu)cgybcmaB448
CsGy3G025340Cucurbita maxima (Rimu)cgybcmaB457
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB288
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB348
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB368
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB416
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB424
CsGy3G025340Cucurbita moschata (Rifu)cgybcmoB431
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB331
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB352
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB353
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB404
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB424
CsGy3G025340Cucurbita pepo (Zucchini)cgybcpeB452
CsGy3G025340Cucumber (Chinese Long) v2cgybcuB111
CsGy3G025340Cucumber (Chinese Long) v2cgybcuB152
CsGy3G025340Bottle gourd (USVL1VR-Ls)cgyblsiB143
CsGy3G025340Bottle gourd (USVL1VR-Ls)cgyblsiB164
CsGy3G025340Bottle gourd (USVL1VR-Ls)cgyblsiB185
CsGy3G025340Melon (DHL92) v3.5.1cgybmeB187
CsGy3G025340Melon (DHL92) v3.5.1cgybmeB216
CsGy3G025340Melon (DHL92) v3.6.1cgybmedB195
CsGy3G025340Melon (DHL92) v3.6.1cgybmedB218
CsGy3G025340Watermelon (Charleston Gray)cgybwcgB173
CsGy3G025340Watermelon (Charleston Gray)cgybwcgB222
CsGy3G025340Watermelon (Charleston Gray)cgybwcgB233
CsGy3G025340Watermelon (97103) v1cgybwmB181
CsGy3G025340Watermelon (97103) v1cgybwmB212
CsGy3G025340Watermelon (97103) v1cgybwmB237
CsGy3G025340Watermelon (97103) v1cgybwmB260
CsGy3G025340Wild cucumber (PI 183967)cgybcpiB110
CsGy3G025340Wild cucumber (PI 183967)cgybcpiB122
CsGy3G025340Silver-seed gourdcarcgybB0073
CsGy3G025340Silver-seed gourdcarcgybB0252
CsGy3G025340Silver-seed gourdcarcgybB0773
CsGy3G025340Silver-seed gourdcarcgybB0947
CsGy3G025340Silver-seed gourdcarcgybB1058
CsGy3G025340Cucumber (Chinese Long) v3cgybcucB116
CsGy3G025340Cucumber (Chinese Long) v3cgybcucB117
CsGy3G025340Cucumber (Chinese Long) v3cgybcucB124
CsGy3G025340Cucumber (Chinese Long) v3cgybcucB158
CsGy3G025340Watermelon (97103) v2cgybwmbB213
CsGy3G025340Watermelon (97103) v2cgybwmbB219
CsGy3G025340Watermelon (97103) v2cgybwmbB225
CsGy3G025340Wax gourdcgybwgoB296