CsGy3G022010.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G022010.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 20343412 .. 20343851 (+)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATAGAACAAATACCCTGAAAGTGGTTGAAATTCGTCAATTACTTTCTCTTCTTCTTCATCTTTCTCAAGCAAATCCTATTTCAATAGAGGTTCTCACCCAGCCAGACCTTCAACTTTTCGACTCTGAGGACGCCCAAACGACCGAAATTCTAATCCCAAAACTTGACAAAGAGTTAGAAATTTCAAATTCTGAGTGTAAAACTACAACCCCATATGAGAAAACAGAAGAAAAACAGAGGGTCTTTTGTTTCTGAAAAAGGTATCCAATGTGCCAAAAATCCCTAGAAAGATGATTATGCAGTGCAAATCTCCAACCCCATATGAGAAAACAGAGGAAAAAGAAAGGATTTTGGTCCTAAAAAATGACTCAATGAATCGATCCAAGGTGCTGAAAAGCCCTGCAAAGATGAATTTGGAGTGTAAAACTCCGATATAA

mRNA sequence

GAAAATAGAACAAATACCCTGAAAGTGGTTGAAATTCGTCAATTACTTTCTCTTCTTCTTCATCTTTCTCAAGCAAATCCTATTTCAATAGAGGTTCTCACCCAGCCAGACCTTCAACTTTTCGACTCTGAGGACGCCCAAACGACCGAAATTCTAATCCCAAAACTTGACAAAGAGTTAGAAATTTCAAATTCTGAGTGTAAAACTACAACCCCATATGAGAAAACAGAAGAAAAACAGAGGGTATCCAATGTGCCAAAAATCCCTAGAAAGATGATTATGCAGTGCAAATCTCCAACCCCATATGAGAAAACAGAGGAAAAAGAAAGGATTTTGGTCCTAAAAAATGACTCAATGAATCGATCCAAGGTGCTGAAAAGCCCTGCAAAGATGAATTTGGAGTGTAAAACTCCGATATAA

Coding sequence (CDS)

GAAAATAGAACAAATACCCTGAAAGTGGTTGAAATTCGTCAATTACTTTCTCTTCTTCTTCATCTTTCTCAAGCAAATCCTATTTCAATAGAGGTTCTCACCCAGCCAGACCTTCAACTTTTCGACTCTGAGGACGCCCAAACGACCGAAATTCTAATCCCAAAACTTGACAAAGAGTTAGAAATTTCAAATTCTGAGTGTAAAACTACAACCCCATATGAGAAAACAGAAGAAAAACAGAGGGTATCCAATGTGCCAAAAATCCCTAGAAAGATGATTATGCAGTGCAAATCTCCAACCCCATATGAGAAAACAGAGGAAAAAGAAAGGATTTTGGTCCTAAAAAATGACTCAATGAATCGATCCAAGGTGCTGAAAAGCCCTGCAAAGATGAATTTGGAGTGTAAAACTCCGATATAA

Protein sequence

ENRTNTLKVVEIRQLLSLLLHLSQANPISIEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSECKTTTPYEKTEEKQRVSNVPKIPRKMIMQCKSPTPYEKTEEKERILVLKNDSMNRSKVLKSPAKMNLECKTPI

Homology

[Close]

BLAST of CsGy3G022010.1 vs. NCBI nr
Match: XP_011653365.1 (PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus] >KGN53676.1 hypothetical protein Csa_4G101270 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 30 IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSECKTTTPYEKTEEKQR------VS 89
          +E+LTQP LQL DSEDAQTT ILIP+LDKEL+ISNSE KTTTP+EKTEEKQR      VS
Sbjct: 1  MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 90 NVPKIPRKMI 94
           VPK PR++I
Sbjct: 61 KVPKSPRELI 70

[Close]

BLAST of CsGy3G022010.1 vs. NCBI nr
Match: KGN57958.1 (hypothetical protein Csa_3G409050 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 57/115 (49.57%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 30  IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSE-----CKTTTPYEKTEEKQRVSN 89
           +EVL QP LQL DS+DAQTT ILI KLDKELEISNSE     CK+ TP EKTE+K+++  
Sbjct: 1   MEVLIQPHLQLSDSKDAQTTAILIQKLDKELEISNSEKMIMQCKSPTPEEKTEKKEKI-- 60

Query: 90  VPKIPRKMIXXXXXXXXXXXXXXXXXXXVLKNDSMNRSKVXXXXAKMNLECKTPI 140
                                       V KN+SM RSKV    AK+NLECKT I
Sbjct: 61  ---------------------------LVPKNESMKRSKVLKSLAKVNLECKTLI 86

[Close]

BLAST of CsGy3G022010.1 vs. NCBI nr
Match: XP_008462927.1 (PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 30 IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSECKTTTPYEKTEEKQRV------S 89
          +EVLT+  +QL DS+D+QT  ILIP+LDK+LEISNSECKTTTP EKTEEKQRV      S
Sbjct: 1  MEVLTRSHVQLSDSDDSQTAAILIPELDKKLEISNSECKTTTPDEKTEEKQRVFVPGKES 60

Query: 90 NVPKIPRK 92
           VPK P K
Sbjct: 61 KVPKSPTK 68

[Close]

BLAST of CsGy3G022010.1 vs. TrEMBL
Match: tr|A0A0A0L0M1|A0A0A0L0M1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101270 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 30 IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSECKTTTPYEKTEEKQR------VS 89
          +E+LTQP LQL DSEDAQTT ILIP+LDKEL+ISNSE KTTTP+EKTEEKQR      VS
Sbjct: 1  MELLTQPHLQLSDSEDAQTTAILIPELDKELKISNSESKTTTPHEKTEEKQRIFVSEKVS 60

Query: 90 NVPKIPRKMI 94
           VPK PR++I
Sbjct: 61 KVPKSPRELI 70

[Close]

BLAST of CsGy3G022010.1 vs. TrEMBL
Match: tr|A0A0A0L848|A0A0A0L848_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G409050 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 57/115 (49.57%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 30  IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSE-----CKTTTPYEKTEEKQRVSN 89
           +EVL QP LQL DS+DAQTT ILI KLDKELEISNSE     CK+ TP EKTE+K+++  
Sbjct: 1   MEVLIQPHLQLSDSKDAQTTAILIQKLDKELEISNSEKMIMQCKSPTPEEKTEKKEKI-- 60

Query: 90  VPKIPRKMIXXXXXXXXXXXXXXXXXXXVLKNDSMNRSKVXXXXAKMNLECKTPI 140
                                       V KN+SM RSKV    AK+NLECKT I
Sbjct: 61  ---------------------------LVPKNESMKRSKVLKSLAKVNLECKTLI 86

[Close]

BLAST of CsGy3G022010.1 vs. TrEMBL
Match: tr|A0A1S3CI15|A0A1S3CI15_CUCME (uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 30 IEVLTQPDLQLFDSEDAQTTEILIPKLDKELEISNSECKTTTPYEKTEEKQRV------S 89
          +EVLT+  +QL DS+D+QT  ILIP+LDK+LEISNSECKTTTP EKTEEKQRV      S
Sbjct: 1  MEVLTRSHVQLSDSDDSQTAAILIPELDKKLEISNSECKTTTPDEKTEEKQRVFVPGKES 60

Query: 90 NVPKIPRK 92
           VPK P K
Sbjct: 61 KVPKSPTK 68

The following BLAST results are available for this feature:

BLAST of CsGy3G022010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653365.1	4.8e-15	72.86	PREDICTED: uncharacterized protein LOC105435203 [Cucumis sativus] >KGN53676.1 hy...	[more]
KGN57958.1	2.7e-13	49.57	hypothetical protein Csa_3G409050 [Cucumis sativus]	[more]
XP_008462927.1	5.0e-12	67.65	PREDICTED: uncharacterized protein LOC103501189 [Cucumis melo]	[more]

BLAST of CsGy3G022010.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G022010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G022010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0M1\|A0A0A0L0M1_CUCSA	3.2e-15	72.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101270 PE=4 SV=1	[more]
tr\|A0A0A0L848\|A0A0A0L848_CUCSA	1.8e-13	49.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G409050 PE=4 SV=1	[more]
tr\|A0A1S3CI15\|A0A1S3CI15_CUCME	3.3e-12	67.65	uncharacterized protein LOC103501189 OS=Cucumis melo OX=3656 GN=LOC103501189 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G022010	CsGy3G022010	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G022010.1.exon.1	CsGy3G022010.1.exon.1	exon
CsGy3G022010.1.exon.2	CsGy3G022010.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G022010.1.CDS.1	CsGy3G022010.1.CDS.1	CDS
CsGy3G022010.1.CDS.2	CsGy3G022010.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G022010.1	CsGy3G022010.1-protein	polypeptide