CsGy3G020810.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G020810.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMajor latex protein
LocationChr3 : 18157760 .. 18160084 (-)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTGTGAATTCCTTGAAGGAAATGACTTTATAACTGTTGCTCTCATACAGTGGTCTTATGATATTGGTAAGCCATATTCTCTCTTTTTCTTTCATTTCAGAACTTTATATTAAATTTATTGAACCAATGTAATATACATTCTCCACCAACAGATTAGTGCTTCAAATCCCAATTTATCCCCACATTAAACTAAGGTTATTTTATATTGGATAATCTAAAATCAAATTGGGCCATAAATTATGTTTCTATTTATAAATGTTAGCCATGAGTATATATATGTATTAGCTTAAGCGTCTTATTTTGCGATACTATAGTTGCATGTCGTTCTGTAGTTAGTACAAATGATGTGATCTTGAATCATTCATGTGGAGACATAAAAGTGAGAAAATCCTATGTAAAGAGTTTACATAAGATTGGCATCATGAAATAGTCACTTTTACGTTATCACACTGTTGACCGTATGAACAAACTTTTTTATTATTGATTATTTTGGTAACTTCATCTTAATCCTAAGCTAACTATGAACTTCTATTCACACAAAATTATCCTTAGATCTACATAGATGAGGGCAGCTGAACAAAGTTTGTCTAATAAACCTCCAATATTAGAGGGTAAGACTAGGTAGATAGCTTTGGGACATAGGGTGCAAGAAAAAATTCACTATTACCTGCTTTAAGGTCAGTAGATAGTTTGTTCCCTTAAGGACTAGATCCAAGTCTAGAACAAGAGACCTCACCCTCTCACCTGAGAGAGATTTAGTTTATAGGTCCACCTTAAACCAGTTGTTCAATAGGTGGATCAGTGGGACTTAAGGAGCAAGATGTAGTATCGTGCGTAAAATGGTATTTTGACCCAGCTGAGGTTATGAACAACCTGTGAATGATTAAATTACTAATCATAGTTATATAAAATTGTCATAAATATATCTATAATGAGGTGAGTGCAACTACGAGACTTTAGTGCAATGACCCATTAGTTAACAAATGTTGATTAGCTTGATCTAGAACAATTTAGCCACTAATTTCGGTTTGTTGGAGCCCATGATCTATAGGTCCATTAGTTCCTCTACTAGCTCATATGGAATAAACTAATTAAAAGAGTATGATGAAAATTTTGAATTGTTCGAATAGGTAAAGAGAGAAACAAACAAATATATGTGCTATAATCGTTGGTTATCAATTTGAGATAGAATTTTGTGTTTAAATGCGATTTAAATATAAAAATTATGAATTCATATTCATGTTCAAAAGCTTGAATATGATGGAAATAGTCAAAATTTAAAAAAGAAAAAAGGTTGACTTTTGACTTTGAACAGTCGAATTTTGACCAACTATAGATTCAAATGTAATTTGAATTTCAAAAAAATGAAGTTCGTGTTTGGGAGATCAGAATTAGTCAAAACGAACAAAATGGTAAAATTTCAAAATGTTGACTTTTGACTTTGACTGGTCAAATGATCATATTGGGCTTTGAATATGGTCATTTGACTAAAGTTATTGAGAAATACAACACTTTGTTGGATAATCTCACTAACATATGGTGGAATATGTGGCTAAATGGGATGTAAATAACTAGTCCACTAACTTTCACTAATGGTTAATGGAAGTGAGGCGTTGAACCTAGGCTAATTTTTACATGCAATAGTTGCGTGTCCTTTCTCTGTTTAAAGGCTTGTTTACAAAATTGCAAAAACTTTTGGCATTTTTAAAATTTTGAAATTGAAAACAAATAAGTGAAAAATTTACCTAAAGTTCTTCGAACTCTAATCTAAATTCCATCTCTCTTTCTTAATTCCTTCATTTATTGTGTCCTACAACCCGGTTCTAAGTCCAAAGAATAGGGTATCAATACTAATAGTGATCTTAGATTCCCGTTCATGAGGAGATTACGAGAATTGAGAAGCTTCCAACGTATTTTTCTATTAATCTCAATTTCATTTAATTAGAGTAACGTTGCATGTTAATTTCTAAATGAGTTAGATGCATTTAGGATACAATTGTTCCTAATTCCACTACCCATGTCAAACCCTTTCCATAAAAAGTATCTTATATAGTTTTTTATACAACAGTTAATAAGGTTGGGAAATGGTATAAATGTTCCCCTTATTCCACCGTTATATCTTTTTCACTCTTCTTTTTCTAGTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

mRNA sequence

ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

Coding sequence (CDS)

ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

Protein sequence

MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQKDTFILLESSFEISLLGLFLSFVISYHK
Homology
[Close]
BLAST of CsGy3G020810.1 vs. NCBI nr
Match: XP_008457052.1 (PREDICTED: kirola-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKCC EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQISADVQIKCCAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810.1 vs. NCBI nr
Match: XP_004145833.1 (PREDICTED: MLP-like protein 31 [Cucumis sativus] >KGN57817.1 Major latex protein [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKC  EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQVSADVQIKCGAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810.1 vs. TrEMBL
Match: tr|A0A1S3C475|A0A1S3C475_CUCME (kirola-like OS=Cucumis melo OX=3656 GN=LOC103496822 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKCC EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQISADVQIKCCAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810.1 vs. TrEMBL
Match: tr|A0A0A0LAX1|A0A0A0LAX1_CUCSA (Major latex protein OS=Cucumis sativus OX=3659 GN=Csa_3G319290 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKC  EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQVSADVQIKCGAEKFYGFFRKNMFQLAQ 33

The following BLAST results are available for this feature:
BLAST of CsGy3G020810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457052.14.7e-0784.85PREDICTED: kirola-like [Cucumis melo][more]
XP_004145833.11.5e-0581.82PREDICTED: MLP-like protein 31 [Cucumis sativus] >KGN57817.1 Major latex protein... [more]
BLAST of CsGy3G020810.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G020810.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G020810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C475|A0A1S3C475_CUCME3.1e-0784.85kirola-like OS=Cucumis melo OX=3656 GN=LOC103496822 PE=4 SV=1[more]
tr|A0A0A0LAX1|A0A0A0LAX1_CUCSA1.0e-0581.82Major latex protein OS=Cucumis sativus OX=3659 GN=Csa_3G319290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G020810CsGy3G020810gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G020810.1.CDS.2CsGy3G020810.1.CDS.2CDS
CsGy3G020810.1.CDS.1CsGy3G020810.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G020810.1.exon.2CsGy3G020810.1.exon.2exon
CsGy3G020810.1.exon.1CsGy3G020810.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G020810.1CsGy3G020810.1-proteinpolypeptide