CsGy3G020810 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G020810
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMajor latex protein
LocationChr3 : 18157760 .. 18160084 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTGTGAATTCCTTGAAGGAAATGACTTTATAACTGTTGCTCTCATACAGTGGTCTTATGATATTGGTAAGCCATATTCTCTCTTTTTCTTTCATTTCAGAACTTTATATTAAATTTATTGAACCAATGTAATATACATTCTCCACCAACAGATTAGTGCTTCAAATCCCAATTTATCCCCACATTAAACTAAGGTTATTTTATATTGGATAATCTAAAATCAAATTGGGCCATAAATTATGTTTCTATTTATAAATGTTAGCCATGAGTATATATATGTATTAGCTTAAGCGTCTTATTTTGCGATACTATAGTTGCATGTCGTTCTGTAGTTAGTACAAATGATGTGATCTTGAATCATTCATGTGGAGACATAAAAGTGAGAAAATCCTATGTAAAGAGTTTACATAAGATTGGCATCATGAAATAGTCACTTTTACGTTATCACACTGTTGACCGTATGAACAAACTTTTTTATTATTGATTATTTTGGTAACTTCATCTTAATCCTAAGCTAACTATGAACTTCTATTCACACAAAATTATCCTTAGATCTACATAGATGAGGGCAGCTGAACAAAGTTTGTCTAATAAACCTCCAATATTAGAGGGTAAGACTAGGTAGATAGCTTTGGGACATAGGGTGCAAGAAAAAATTCACTATTACCTGCTTTAAGGTCAGTAGATAGTTTGTTCCCTTAAGGACTAGATCCAAGTCTAGAACAAGAGACCTCACCCTCTCACCTGAGAGAGATTTAGTTTATAGGTCCACCTTAAACCAGTTGTTCAATAGGTGGATCAGTGGGACTTAAGGAGCAAGATGTAGTATCGTGCGTAAAATGGTATTTTGACCCAGCTGAGGTTATGAACAACCTGTGAATGATTAAATTACTAATCATAGTTATATAAAATTGTCATAAATATATCTATAATGAGGTGAGTGCAACTACGAGACTTTAGTGCAATGACCCATTAGTTAACAAATGTTGATTAGCTTGATCTAGAACAATTTAGCCACTAATTTCGGTTTGTTGGAGCCCATGATCTATAGGTCCATTAGTTCCTCTACTAGCTCATATGGAATAAACTAATTAAAAGAGTATGATGAAAATTTTGAATTGTTCGAATAGGTAAAGAGAGAAACAAACAAATATATGTGCTATAATCGTTGGTTATCAATTTGAGATAGAATTTTGTGTTTAAATGCGATTTAAATATAAAAATTATGAATTCATATTCATGTTCAAAAGCTTGAATATGATGGAAATAGTCAAAATTTAAAAAAGAAAAAAGGTTGACTTTTGACTTTGAACAGTCGAATTTTGACCAACTATAGATTCAAATGTAATTTGAATTTCAAAAAAATGAAGTTCGTGTTTGGGAGATCAGAATTAGTCAAAACGAACAAAATGGTAAAATTTCAAAATGTTGACTTTTGACTTTGACTGGTCAAATGATCATATTGGGCTTTGAATATGGTCATTTGACTAAAGTTATTGAGAAATACAACACTTTGTTGGATAATCTCACTAACATATGGTGGAATATGTGGCTAAATGGGATGTAAATAACTAGTCCACTAACTTTCACTAATGGTTAATGGAAGTGAGGCGTTGAACCTAGGCTAATTTTTACATGCAATAGTTGCGTGTCCTTTCTCTGTTTAAAGGCTTGTTTACAAAATTGCAAAAACTTTTGGCATTTTTAAAATTTTGAAATTGAAAACAAATAAGTGAAAAATTTACCTAAAGTTCTTCGAACTCTAATCTAAATTCCATCTCTCTTTCTTAATTCCTTCATTTATTGTGTCCTACAACCCGGTTCTAAGTCCAAAGAATAGGGTATCAATACTAATAGTGATCTTAGATTCCCGTTCATGAGGAGATTACGAGAATTGAGAAGCTTCCAACGTATTTTTCTATTAATCTCAATTTCATTTAATTAGAGTAACGTTGCATGTTAATTTCTAAATGAGTTAGATGCATTTAGGATACAATTGTTCCTAATTCCACTACCCATGTCAAACCCTTTCCATAAAAAGTATCTTATATAGTTTTTTATACAACAGTTAATAAGGTTGGGAAATGGTATAAATGTTCCCCTTATTCCACCGTTATATCTTTTTCACTCTTCTTTTTCTAGTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

mRNA sequence

ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

Coding sequence (CDS)

ATGGCTCAAATTTCCCATCTGTCTGCTGATGTTCAGATAAAATGTTGTACTGAGAAATTCTATGGCTTTTTTAGGAAAGATATGTTCCCATTGGCCCAAAAAGATACCTTCATACTTTTGGAAAGTTCTTTTGAAATTTCTCTACTTGGGCTTTTCCTTTCTTTTGTAATTTCTTACCATAAATAA

Protein sequence

MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQKDTFILLESSFEISLLGLFLSFVISYHK
Homology
[Close]
BLAST of CsGy3G020810 vs. NCBI nr
Match: XP_008457052.1 (PREDICTED: kirola-like [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKCC EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQISADVQIKCCAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810 vs. NCBI nr
Match: XP_004145833.1 (PREDICTED: MLP-like protein 31 [Cucumis sativus] >KGN57817.1 Major latex protein [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKC  EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQVSADVQIKCGAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810 vs. TrEMBL
Match: tr|A0A1S3C475|A0A1S3C475_CUCME (kirola-like OS=Cucumis melo OX=3656 GN=LOC103496822 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKCC EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQISADVQIKCCAEKFYGFFRKNMFQLAQ 33

[Close]
BLAST of CsGy3G020810 vs. TrEMBL
Match: tr|A0A0A0LAX1|A0A0A0LAX1_CUCSA (Major latex protein OS=Cucumis sativus OX=3659 GN=Csa_3G319290 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1  MAQISHLSADVQIKCCTEKFYGFFRKDMFPLAQ 34
          MAQIS +SADVQIKC  EKFYGFFRK+MF LAQ
Sbjct: 1  MAQISQVSADVQIKCGAEKFYGFFRKNMFQLAQ 33

The following BLAST results are available for this feature:
BLAST of CsGy3G020810 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008457052.14.7e-0784.85PREDICTED: kirola-like [Cucumis melo][more]
XP_004145833.11.5e-0581.82PREDICTED: MLP-like protein 31 [Cucumis sativus] >KGN57817.1 Major latex protein... [more]
BLAST of CsGy3G020810 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G020810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G020810 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C475|A0A1S3C475_CUCME3.1e-0784.85kirola-like OS=Cucumis melo OX=3656 GN=LOC103496822 PE=4 SV=1[more]
tr|A0A0A0LAX1|A0A0A0LAX1_CUCSA1.0e-0581.82Major latex protein OS=Cucumis sativus OX=3659 GN=Csa_3G319290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020810.1CsGy3G020810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G020810MELO3C020264.2Melon (DHL92) v3.6.1cgybmedB216
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G020810Watermelon (97103) v2cgybwmbB209
CsGy3G020810Wax gourdcgybwgoB259
CsGy3G020810Wax gourdcgybwgoB281
CsGy3G020810Cucurbita maxima (Rimu)cgybcmaB308
CsGy3G020810Cucurbita maxima (Rimu)cgybcmaB368
CsGy3G020810Cucurbita moschata (Rifu)cgybcmoB281
CsGy3G020810Cucurbita moschata (Rifu)cgybcmoB339
CsGy3G020810Cucurbita pepo (Zucchini)cgybcpeB380
CsGy3G020810Cucurbita pepo (Zucchini)cgybcpeB397
CsGy3G020810Cucumber (Chinese Long) v2cgybcuB109
CsGy3G020810Bottle gourd (USVL1VR-Ls)cgyblsiB192
CsGy3G020810Bottle gourd (USVL1VR-Ls)cgyblsiB199
CsGy3G020810Melon (DHL92) v3.5.1cgybmeB212
CsGy3G020810Watermelon (Charleston Gray)cgybwcgB217
CsGy3G020810Watermelon (97103) v1cgybwmB232
CsGy3G020810Wild cucumber (PI 183967)cgybcpiB110
CsGy3G020810Silver-seed gourdcarcgybB0757
CsGy3G020810Cucumber (Chinese Long) v3cgybcucB117