CsGy3G019290.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019290.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Unknown Protein
Location	Chr3 : 15564045 .. 15564859 (+)
Sequence length	438

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGCATGTATAGAAATATTGTGGGATAAAGGTTTTACATAAATAATAGATCTCAACTATAACTTGTGGTTTCATCATAGCTCCAATGATCCCAACCTGTGTAAAGATGCATTTAAGCTAATATTGGAACCAACCTTCTTTAGTTTATCATGCTGTTGTAGCAATGGTCTGTATAATGTTGCTGTGCATTTCAGCAAAGCACTGTTGTATGAGTTGTTGATGGGATGAACCCGGGATTTAGCTTTTTCCTCCTATGCTTTCACCTTCTCGAATTGTTCGTTTGAGTTCTACTGCAACAAACTTGTACAAAATTCATTTACACTGGTTTTCCCCGGATCTAGCTGCCAAAATTAGTCTAGTTATAAGACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTGTAAGTCGTGGTTCACAGCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

mRNA sequence

ATGCAGCAGCATACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

Coding sequence (CDS)

ATGCAGCAGCATACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

Protein sequence

MQQHTVKPLSSFAWFDFHRVTDCGTLGVACTPTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRDVVCSSKLGHIAYNSVKITFGRGDEITVVHEKGPRKIIPTPNEIFHKLTRQNHPC

Homology

[Close]

BLAST of CsGy3G019290.1 vs. NCBI nr
Match: CAN77393.1 (hypothetical protein VITISV_003227 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 33/105 (31.43%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 32  PTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRD 91
           P T +E+S   ++++PVD +K+ +IL EL+ + ++AR HS  + + K   ML    VP +
Sbjct: 9   PXTIAELSGVSLQKLPVDLVKNAIILLELSGERAVARVHSFEIFEAKGPGMLLWRGVPSN 68

Query: 92  VVCSSKLG------HIAYNSVKITFGRGDEITVVHEKGPRKIIPT 131
           VV     G       +AY+ ++++  R  E+ VV ++G  +++PT
Sbjct: 69  VVEIIVEGGVLVVVRVAYDRLEVSLRRRHEVGVVEKEGSGQVVPT 113

[Close]

BLAST of CsGy3G019290.1 vs. TrEMBL
Match: tr|A5BYH0|A5BYH0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003227 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 33/105 (31.43%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 32  PTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRD 91
           P T +E+S   ++++PVD +K+ +IL EL+ + ++AR HS  + + K   ML    VP +
Sbjct: 9   PXTIAELSGVSLQKLPVDLVKNAIILLELSGERAVARVHSFEIFEAKGPGMLLWRGVPSN 68

Query: 92  VVCSSKLG------HIAYNSVKITFGRGDEITVVHEKGPRKIIPT 131
           VV     G       +AY+ ++++  R  E+ VV ++G  +++PT
Sbjct: 69  VVEIIVEGGVLVVVRVAYDRLEVSLRRRHEVGVVEKEGSGQVVPT 113

The following BLAST results are available for this feature:

BLAST of CsGy3G019290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN77393.1	3.3e-06	31.43	hypothetical protein VITISV_003227 [Vitis vinifera]	[more]

BLAST of CsGy3G019290.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G019290.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G019290.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5BYH0\|A5BYH0_VITVI	2.2e-06	31.43	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003227 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G019290	CsGy3G019290	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G019290.1	CsGy3G019290.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G019290.1.exon.1	CsGy3G019290.1.exon.1	exon
CsGy3G019290.1.exon.2	CsGy3G019290.1.exon.2	exon
CsGy3G019290.1.exon.3	CsGy3G019290.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G019290.1.CDS.1	CsGy3G019290.1.CDS.1	CDS
CsGy3G019290.1.CDS.2	CsGy3G019290.1.CDS.2	CDS
CsGy3G019290.1.CDS.3	CsGy3G019290.1.CDS.3	CDS