CsGy3G019290 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G019290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr3 : 15564045 .. 15564859 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCAGCATGTATAGAAATATTGTGGGATAAAGGTTTTACATAAATAATAGATCTCAACTATAACTTGTGGTTTCATCATAGCTCCAATGATCCCAACCTGTGTAAAGATGCATTTAAGCTAATATTGGAACCAACCTTCTTTAGTTTATCATGCTGTTGTAGCAATGGTCTGTATAATGTTGCTGTGCATTTCAGCAAAGCACTGTTGTATGAGTTGTTGATGGGATGAACCCGGGATTTAGCTTTTTCCTCCTATGCTTTCACCTTCTCGAATTGTTCGTTTGAGTTCTACTGCAACAAACTTGTACAAAATTCATTTACACTGGTTTTCCCCGGATCTAGCTGCCAAAATTAGTCTAGTTATAAGACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTGTAAGTCGTGGTTCACAGCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

mRNA sequence

ATGCAGCAGCATACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

Coding sequence (CDS)

ATGCAGCAGCATACGGTGAAGCCGTTGAGCTCCTTCGCCTGGTTTGATTTTCATCGGGTTACCGACTGTGGAACACTTGGGGTGGCCTGCACACCAACCACCAGGAGTGAAGTCTCCTTTTTTCCGATGAAGCAAATCCCTGTCGATCAGATCAAGCACGGAGTCATCTTGTTTGAACTTACGAGCAAAGGCAGCATTGCTCGCAATCATTCTCTCTGTGTCGTTAAGAGAAAGCGTATGTGGATGTTGTTTGGGGGGATAGTCCCAAGAGATGTAGTCTGTAGTAGCAAACTCGGGCACATTGCATATAACAGTGTGAAAATAACCTTCGGGAGAGGAGACGAAATTACTGTAGTACATGAGAAGGGTCCTAGGAAGATTATCCCAACCCCAAATGAAATATTCCACAAACTCACGAGACAGAACCATCCATGCTGA

Protein sequence

MQQHTVKPLSSFAWFDFHRVTDCGTLGVACTPTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRDVVCSSKLGHIAYNSVKITFGRGDEITVVHEKGPRKIIPTPNEIFHKLTRQNHPC
Homology
[Close]
BLAST of CsGy3G019290 vs. NCBI nr
Match: CAN77393.1 (hypothetical protein VITISV_003227 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 33/105 (31.43%), Postives = 61/105 (58.10%), Query Frame = 0 

Query: 32  PTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRD 91
           P T +E+S   ++++PVD +K+ +IL EL+ + ++AR HS  + + K   ML    VP +
Sbjct: 9   PXTIAELSGVSLQKLPVDLVKNAIILLELSGERAVARVHSFEIFEAKGPGMLLWRGVPSN 68

Query: 92  VVCSSKLG------HIAYNSVKITFGRGDEITVVHEKGPRKIIPT 131
           VV     G       +AY+ ++++  R  E+ VV ++G  +++PT
Sbjct: 69  VVEIIVEGGVLVVVRVAYDRLEVSLRRRHEVGVVEKEGSGQVVPT 113

[Close]
BLAST of CsGy3G019290 vs. TrEMBL
Match: tr|A5BYH0|A5BYH0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003227 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 33/105 (31.43%), Postives = 61/105 (58.10%), Query Frame = 0 

Query: 32  PTTRSEVSFFPMKQIPVDQIKHGVILFELTSKGSIARNHSLCVVKRKRMWMLFGGIVPRD 91
           P T +E+S   ++++PVD +K+ +IL EL+ + ++AR HS  + + K   ML    VP +
Sbjct: 9   PXTIAELSGVSLQKLPVDLVKNAIILLELSGERAVARVHSFEIFEAKGPGMLLWRGVPSN 68

Query: 92  VVCSSKLG------HIAYNSVKITFGRGDEITVVHEKGPRKIIPT 131
           VV     G       +AY+ ++++  R  E+ VV ++G  +++PT
Sbjct: 69  VVEIIVEGGVLVVVRVAYDRLEVSLRRRHEVGVVEKEGSGQVVPT 113

The following BLAST results are available for this feature:
BLAST of CsGy3G019290 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN77393.13.3e-0631.43hypothetical protein VITISV_003227 [Vitis vinifera][more]
BLAST of CsGy3G019290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G019290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G019290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5BYH0|A5BYH0_VITVI2.2e-0631.43Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003227 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G019290.1CsGy3G019290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G019290Wild cucumber (PI 183967)cgybcpiB110
CsGy3G019290Silver-seed gourdcarcgybB0043
CsGy3G019290Silver-seed gourdcarcgybB0650
CsGy3G019290Cucumber (Chinese Long) v3cgybcucB117
CsGy3G019290Watermelon (97103) v2cgybwmbB206
CsGy3G019290Wax gourdcgybwgoB271
CsGy3G019290Cucurbita maxima (Rimu)cgybcmaB332
CsGy3G019290Cucurbita maxima (Rimu)cgybcmaB410
CsGy3G019290Cucurbita moschata (Rifu)cgybcmoB301
CsGy3G019290Cucurbita moschata (Rifu)cgybcmoB386
CsGy3G019290Cucurbita pepo (Zucchini)cgybcpeB317
CsGy3G019290Cucurbita pepo (Zucchini)cgybcpeB362
CsGy3G019290Cucumber (Chinese Long) v2cgybcuB109
CsGy3G019290Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G019290Melon (DHL92) v3.5.1cgybmeB210
CsGy3G019290Melon (DHL92) v3.6.1cgybmedB215
CsGy3G019290Watermelon (Charleston Gray)cgybwcgB214
CsGy3G019290Watermelon (97103) v1cgybwmB229