CsGy3G019130.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G019130.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 15322358 .. 15323507 (+)
Sequence length270
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCCTCAGTGTGAGGAAGAATGAGAATGGAGATAAGTTGATGGATGAAGACCTATTCAGAAATTTCATCCTCAAGCTTGCTTCTAAAATTCAGAACCCAAGACGTGTCAATCAAATATTTTTGGAATTTTAGATGCAAGTTATATGCTTGTTTTATCTCGACTTTATGACATTTTCATATCCTAATCATTGAAATATCTTGTTTCCCACGATAAATAGTTGTGATTTATATTATTTTGTTTTGTTTTCTTGCTAAACTAAATGATTCATACTCTTTATAATGAAGATCTCATTTGATGGCACCTTGTTCATTCTCTGTTTGCCTACTTTTGGCTCTTCTGTTTCTTTTTTCTTCTTTTACTGAACATTATACTCTAGACTTATCATTTTATGCATTGATAACACGCGTCCAGGATTCCTTTTCATAGGTGAAGTTCGAAATTGCTGCTTATGAGAAGTTAGTATTTGGAAAAATTAGAGGTTTGTTCCTCATTTATCATTGTGATGGAAAATTGATTTTACCTTCCTTCGTTTTTTTTTTCTTTTCTTTTTTTTAATTGAATATTTAAATAACTGAAAACTGTTTTGAATTTTTTTATGCAGATGGTATTCTTGTTGTTGCATCACATCTACTAATCAGTCCTATTCAGTTCAATCCAGTCGTGGCCGTAATCTCCAATCTGTCGCATTCTCTTGAATATTCAATCTGCATCTGTGACCTCCTCTATCGGTAAGTCGTCTCTTCCTTTTCTATTTCTCTATTTCTTTGTAATCTTTCCCTCAACTCCATGTCAAAATGTATGTAATGTGTGCAATTTTAAATTTTGGACAAACAATATATCAGACTTATAGCCGAAATAGATCACTATTTGAGAATGGGTGAATGAATTCTTAGTTTTTTCTTGTTTTGTTTAGGGTTTGGAATGATAAAGAGTGAAATGTACATCTAATTTCAATATATTTTGTAAATCATTTTAAATAGGAGAAAAAATATTTAGACGATTTTGCTTTCTTTTTAGTAATATTAAATTGCTAAAAATTATTTGCAACTATTTCTTTGTAGCTTAGCCACTCGAAATATGAGAAATTTTGTGAGCATATTCATGTCTGGAGTAAAGATGAATGCATGTGATTCTAGCTCATAG

mRNA sequence

ATGTCCTCCCTCAGTGTGAGGAAGAATGAGAATGGAGATAAGTTGATGGATGAAGACCTATTCAGAAATTTCATCCTCAAGCTTGCTTCTAAAATTCAGAACCCAAGACGTGTGAAGTTCGAAATTGCTGCTTATGAGAAGTTAGTATTTGGAAAAATTAGAGGGTTTGGAATGATAAAGAGTGAAATCTTAGCCACTCGAAATATGAGAAATTTTGTGAGCATATTCATGTCTGGAGTAAAGATGAATGCATGTGATTCTAGCTCATAG

Coding sequence (CDS)

ATGTCCTCCCTCAGTGTGAGGAAGAATGAGAATGGAGATAAGTTGATGGATGAAGACCTATTCAGAAATTTCATCCTCAAGCTTGCTTCTAAAATTCAGAACCCAAGACGTGTGAAGTTCGAAATTGCTGCTTATGAGAAGTTAGTATTTGGAAAAATTAGAGGGTTTGGAATGATAAAGAGTGAAATCTTAGCCACTCGAAATATGAGAAATTTTGTGAGCATATTCATGTCTGGAGTAAAGATGAATGCATGTGATTCTAGCTCATAG

Protein sequence

MSSLSVRKNENGDKLMDEDLFRNFILKLASKIQNPRRVKFEIAAYEKLVFGKIRGFGMIKSEILATRNMRNFVSIFMSGVKMNACDSSS
Homology
[Close]
BLAST of CsGy3G019130.1 vs. NCBI nr
Match: KGN46560.1 (hypothetical protein Csa_6G108580 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MSSLSVRKNENGDKLMDEDLFRNFILKLASKIQNPRRVKFEIAAYEKLVFGKIR 55
          MSSLSVRKNENGD+LMD DLF NFILK      +    K E+AAYE LVFGKIR
Sbjct: 1  MSSLSVRKNENGDELMDGDLFGNFILK-----DSFWEAKSELAAYENLVFGKIR 49

[Close]
BLAST of CsGy3G019130.1 vs. TrEMBL
Match: tr|A0A0A0KA31|A0A0A0KA31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-08
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MSSLSVRKNENGDKLMDEDLFRNFILKLASKIQNPRRVKFEIAAYEKLVFGKIR 55
          MSSLSVRKNENGD+LMD DLF NFILK      +    K E+AAYE LVFGKIR
Sbjct: 1  MSSLSVRKNENGDELMDGDLFGNFILK-----DSFWEAKSELAAYENLVFGKIR 49

The following BLAST results are available for this feature:
BLAST of CsGy3G019130.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46560.18.2e-0868.52hypothetical protein Csa_6G108580 [Cucumis sativus][more]
BLAST of CsGy3G019130.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G019130.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G019130.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA31|A0A0A0KA31_CUCSA5.4e-0868.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108580 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G019130CsGy3G019130gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G019130.1CsGy3G019130.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G019130.1.exon.1CsGy3G019130.1.exon.1exon
CsGy3G019130.1.exon.2CsGy3G019130.1.exon.2exon
CsGy3G019130.1.exon.3CsGy3G019130.1.exon.3exon
CsGy3G019130.1.exon.4CsGy3G019130.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G019130.1.CDS.1CsGy3G019130.1.CDS.1CDS
CsGy3G019130.1.CDS.2CsGy3G019130.1.CDS.2CDS
CsGy3G019130.1.CDS.3CsGy3G019130.1.CDS.3CDS
CsGy3G019130.1.CDS.4CsGy3G019130.1.CDS.4CDS