CsGy3G018440.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G018440.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 14580130 .. 14582398 (+)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGCCTTGAAGCAATATGTGAGGTATGATATTAAAAATGTTACTTTTAGTATATTAAACATGTTACTATTTGTTATAGCTAAAATTAGCCTCCTTAGGATGGCCATGGGAGAGTCTAGCAAAACTTAGAGAGAACTACGTGGAACCCATAAGGTAATTTCATGCAAGAACGAGTGTAGTTGAAATTAACACTCAAATTTCAACTAATTCAATGGGAGGAGCATCAAGCACAAAGAGCTTATTCACCTAATTCGACTAAACTGAGCTAATCCCACTTCATGTAAGATTTCTCTACTAAGCCAAGTCAAAGGTAAAATATTATTTTACTTCTCAAGTAAAATTTTGACTTACACTATTAGAAAATGGAGATCTTCCGACGCACAAAATCGTCAGAAGATATATGAAAAAGCATAGAAAAAAGTTCTCCTTACTCGTAAATGTGCGTTGGGATCTGAATCAGGAAAGGATTTTTCGACGCACAAAATGAAGCGTCAAGAGATCATCTTCACATCTCTCGACATTGTATGGTTGGCTTCGGGAGATTTGAGACATGCAAAGGATCTCTAGATGTTTCATTTTGTGAGTCGAAAAATCTTCTATTTTTTTAAAAAAAATATATATTGTCCATTATTAAATAGAAGATATATATTTTGCAATTTTGTTGGGTAAAACAACTAAGTGAAAAGAATGAATGGATGGGATGTCACCATCATCAAACAAGGGCAACTTGAATGATTGGTTGAAGTGGTATGGAATAATACTTTTGTTCCTATGCAACACAATGTTTCTTAAATTAAAAACGCCAACCAAAGAAAAAACCCTTATTCAAAGAGAGAAGAAAATAGATTTTCTTTCCTCCTTTCCTTTCAGTCTCTACCTTTTCCCTTCTTTATAATTGTTTTCTTAAGTTCCTCTTGGATAGAAAATTTAAAAGTTGCCTAAGATTCTTTCAATCTGAAAATCCATACATGAATTTTCATATTTTTTTTTCAATCCACATTCCCACTACAACTAAAGATTGCTCTAGTAGGATTAAATCAAAGGATCGTCCATTTTCCTTCAAGGTTCAATGCAGAAAACTCAAAAAGGCTGCAACACATAGTAATAATACTCTTCTTTAATTCTTCTTTAGAGTAGAAAAAGTAATTAACCAACTTCTCTGGTAAGATCTCAGTCGATGCCAAGCATGAGACCTCGCATCATCGAAACCCATCCCATCAGATAACCAAACAAAATCAGACAACCAAGTGATTACGAAGATGAAAATGATTTACTTGGAATGAAGTGGTTCTGACGTTGGACGAAAAAGTAGTTCCAACAATGGAAAGAAGAAAAAGAAAGCCTTGAAAGCCCTAAAAATTTTCCTCCTTCACAAATCTATAAAATACAGATTGGGGGAGGGTGGCCAACTTTTGACGTCGTTCAATATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATGTCCTATCTCTCAATGACCTTTCTTCCAACTAGAGGGGTAAGAATATGGGTTGAACCCGAATAACTTGGACTACTCAACCCATATTATAAGGGCTGGATTGGGTTGGATTGAAAATTTTGGTTATTTTCGGATTGGGTTGGGTCTCAGATTGGAGGGTTGAAAATTTTAGTTCAACCCAACCCAACCCGAATTAATATAATATAATATAATATATATTATATTTTTTATTTTATTTTATTTAATATTTAAAAACAATTAGGTAGAAAAAGAAATCCAACGCACATTCCTACTTCCTTTCCACTTTCTCTTTCCTGATTCCTCTTTCTCCATTTCACGATTTCTTCTCCTCTCCGCCATTTCTCATCTGAAATTTCACTATCTCAGTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

mRNA sequence

ATGCTTTGCCTTGAAGCAATATGTGAGCTAAAATTAGCCTCCTTAGGATGGCCATGGGAGAGTCTAGCAAAACTTAGAGAGAACTACGTGGAACCCATAAGAGTAGAAAAATTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Coding sequence (CDS)

ATGCTTTGCCTTGAAGCAATATGTGAGCTAAAATTAGCCTCCTTAGGATGGCCATGGGAGAGTCTAGCAAAACTTAGAGAGAACTACGTGGAACCCATAAGAGTAGAAAAATTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Protein sequence

MLCLEAICELKLASLGWPWESLAKLRENYVEPIRVEKFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Homology
[Close]
BLAST of CsGy3G018440.1 vs. NCBI nr
Match: KGN57542.1 (hypothetical protein Csa_3G207910 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 38  FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP 97
           FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP
Sbjct: 89  FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP 148

Query: 98  SP 100
           SP
Sbjct: 149 SP 150

[Close]
BLAST of CsGy3G018440.1 vs. TrEMBL
Match: tr|A0A0A0LAA6|A0A0A0LAA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207910 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 38  FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP 97
           FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP
Sbjct: 89  FVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCP 148

Query: 98  SP 100
           SP
Sbjct: 149 SP 150

The following BLAST results are available for this feature:
BLAST of CsGy3G018440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57542.13.7e-25100.00hypothetical protein Csa_3G207910 [Cucumis sativus][more]
BLAST of CsGy3G018440.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G018440.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G018440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAA6|A0A0A0LAA6_CUCSA2.4e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207910 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G018440CsGy3G018440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G018440.1CsGy3G018440.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018440.1.exon.1CsGy3G018440.1.exon.1exon
CsGy3G018440.1.exon.2CsGy3G018440.1.exon.2exon
CsGy3G018440.1.exon.3CsGy3G018440.1.exon.3exon
CsGy3G018440.1.exon.4CsGy3G018440.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018440.1.CDS.1CsGy3G018440.1.CDS.1CDS
CsGy3G018440.1.CDS.2CsGy3G018440.1.CDS.2CDS
CsGy3G018440.1.CDS.3CsGy3G018440.1.CDS.3CDS
CsGy3G018440.1.CDS.4CsGy3G018440.1.CDS.4CDS