CsGy3G018270.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G018270.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 14443498 .. 14445437 (+)
Sequence length754
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCAATGACACAATGAAATAAAAAATAAATGGGTTTAGGAGGAAAAATGTGTCATTCTTATTAAACAGGCATGTTTTTTTTAAAGAAGATAGAAACTCCTTCACGAAAAAACACCAACCCTTTTCCTCAGTAAGCCTCTTCACCTTCTCCATGATTTCGATTACCACCTCCTTCAACCCTGATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTAACTCAATTCAACTAATAATTTCAAGCTATGTGCTTTGTTTCATGTTTCATCCTTCTTGTGTTTGATTTGGCATTGTGAAGCTGTAATGGTTATGTTTGTGAGTTTCCTTGTAAGATTCATTCATATTAGAGTTATAGTTATAAATCCTAAACCCTAAAAGTGGTACTCCATATTTGTGTGGAAGAAAGTAATGTACAATACTATGAACTGTATTGAAGGAATAAGAACATGCATGATGTTTTAGTTTAGGGTTCAACATGTGCATCCATAATATTATTGTGTTGCCCATTTGTATTGAACTATCACGTGTAAATGAAAGAACTTTGTTCATTTGATTATGATATATTAAGTTCAAAAACGCATGAATCTATTGGTTCACAATAATTGATTATTGTAAAAGGTAGTTATGTCTTGTTAGATTTTATTGTAGTTTGGTGAATTGAGTTTGAGGTGGCGTTTTGTTTATCTCCAAAGGTAAGTTCAGTCATCCATCTCTCAAGTCGTTCTTTCTCTCTCTTGTTTTTCTCATTGATTTTGTTTGTTTAATTTTTGATATCTATCCTTATTCCTCACTGTTGAATTTATTACATTACACAGAAGCTTGCTCCATCAATACAACCTTTATTAGTATGCTCAAAACTTGTTTGAGGAAATGTCGCATCTCAACAAAGTCTTAGCTTAAAATGAGTCTCAAAACTACAATTTTTCTTACATTACTACTTTAGATTCAATTTTTTACTGGTAAATTTTCAACTCATTTGCTATTAAAATGTGTTTATCCATGTGTTGTTGGTGGTTAATTTACATGTTTATGGCCGTTTTATGAGTTTCATGAGATTTTGTGTAAATTGAAAGAGTAAGGATTTCAACATCACTAAATTTCAATATAATTTGAAGATGTCAAAATATATGCTAAGCTATAAAAAAAAATGGTAGTCCAATGAGGGTCTCTAATGTCATTCTCCATCTTTGTCCAATTTTTGAACTTGACTTACTTTAATTGTAAAACGACAAGCAAACAAGAGGGTATCTTCTAACTACTTATGTGGATGATTTCTTTAATATTATAAAGTAAACTTATTGTTTTTTATGTGTTTGGTTGTACTTATAATATATTTATTTTTGAAATTATTGCTAATGATTAGGTTTAGAAATTGGTATAGATTAAGAATTGTGTTTGAAGGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGAAGAGGCAAAGAAGAGAAATGGGCGATAACTAAAGTAGGGGTCGAATGCCAGCGTCGAGAGTTCTACCAAGTCCCTCCCACCACAACACAAAGAGTTGCATCTTGGTGGCGAAGAGAGGTTGGTACATTGCTACACGATGAGACAAGTAAATCTGACATAAAGATGAAAAAGAGGTACCAAGCTATAGGATCATGTTTTAAGTCGTGTTATAAGAAAAAAGTTTAAATTATGTAGAACATTGTAAAAGTGTTAAGTTAATAAAAAAAACA

mRNA sequence

TTTCAATGACACAATGAAATAAAAAATAAATGGGTTTAGGAGGAAAAATGTGTCATTCTTATTAAACAGGCATGTTTTTTTTAAAGAAGATAGAAACTCCTTCACGAAAAAACACCAACCCTTTTCCTCAGTAAGCCTCTTCACCTTCTCCATGATTTCGATTACCACCTCCTTCAACCCTGATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGAAGAGGCAAAGAAGAGAAATGGGCGATAACTAAAGTAGGGGTCGAATGCCAGCGTCGAGAGTTCTACCAAGTCCCTCCCACCACAACACAAAGAGTTGCATCTTGGTGGCGAAGAGAGGTTGGTACATTGCTACACGATGAGACAAGTAAATCTGACATAAAGATGAAAAAGAGGTACCAAGCTATAGGATCATGTTTTAAGTCGTGTTATAAGAAAAAAGTTTAAATTATGTAGAACATTGTAAAAGTGTTAAGTTAATAAAAAAAACA

Coding sequence (CDS)

ATGCAAGCACCAGTCGTCGCCTTTGTCACCCCTCTCCCCTTCTGTCTGACATTTTCTTCTCTTCTTCGTCAACTGCATCTCACGAATCCCAAATTTAGTGTTGTCGTCCAGCTTCAGTCGCCACCAAACAGGTTTGGGGTTTTTGGCTTGATTGGGCTCCTGTTCCAATTGTTTGAGCATTGTGCAACGATTTCGGCAACTTCTAAAGTTGTCATCCAGTTTGAGGTTGCACGAAGAACGAGGAAAAAGGAGAGAAGAAAAAAGCTTCACTTCTCCATGCGCCTGCCTCGAGGAGGCAATTGA

Protein sequence

MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEHCATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Homology
[Close]
BLAST of CsGy3G018270.1 vs. NCBI nr
Match: KGN57526.1 (hypothetical protein Csa_3G205290 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 3.4e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

[Close]
BLAST of CsGy3G018270.1 vs. TrEMBL
Match: tr|A0A0A0LBY3|A0A0A0LBY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G205290 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60
           MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH
Sbjct: 1   MQAPVVAFVTPLPFCLTFSSLLRQLHLTNPKFSVVVQLQSPPNRFGVFGLIGLLFQLFEH 60

Query: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 101
           CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN
Sbjct: 61  CATISATSKVVIQFEVARRTRKKERRKKLHFSMRLPRGGN 100

The following BLAST results are available for this feature:
BLAST of CsGy3G018270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57526.13.4e-47100.00hypothetical protein Csa_3G205290 [Cucumis sativus][more]
BLAST of CsGy3G018270.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G018270.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G018270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBY3|A0A0A0LBY3_CUCSA2.3e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G205290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G018270CsGy3G018270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G018270.1CsGy3G018270.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018270.1.five_prime_UTR.1CsGy3G018270.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018270.1.exon.1CsGy3G018270.1.exon.1exon
CsGy3G018270.1.exon.2CsGy3G018270.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018270.1.CDS.1CsGy3G018270.1.CDS.1CDS
CsGy3G018270.1.CDS.2CsGy3G018270.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018270.1.three_prime_UTR.1CsGy3G018270.1.three_prime_UTR.1three_prime_UTR