CsGy3G018250.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G018250.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 14403728 .. 14404459 (-)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGTTATTACTCCTGGAGAGGTGAACAGTGGATTATAAAAGTCAGTGATTTTTTATTAAACTAACAGATTTCAGTACAATAAAAAATCTAATAGCTTCATCATCAATATGGACAATCTTTAACAACAAGGAAATTTCTCACAATTCAAGAATTTCAGTGAGTCTCTTTTTTATTTTCTTTTTTACTGAAAAGAAGAAAAAAAAAAGAGTAGAAAATTTGATGTATCAAAGACGTTATTAAAATAGGAATTAAGCATTGAAAATAATAATTATCGTAATATATGAAAATTGCAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAAGTTACTTTAACTTCGGAATGCACGTGCTTAGCACTTGCAAGTTCCTACCAAAACGAAACCATTAATATTTGGAGCTCTCATTTTTTAAAATTTCTAATGAACCGACTAGACCCAAAATGGGATATGGGTTATGCTATTTTTAATTAATTTTGCTCATGAAAAATGTCGCAGTGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

mRNA sequence

GGTGTTATTACTCCTGGAGAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAATGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

Coding sequence (CDS)

GGTGTTATTACTCCTGGAGAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAATGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

Protein sequence

GVITPGERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGGGRRVEHARKAGGGGALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP
Homology
[Close]
BLAST of CsGy3G018250.1 vs. NCBI nr
Match: KGN57523.1 (hypothetical protein Csa_3G203780 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 5.6e-15
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 40 IGKCVCGGXXRRVEHARKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
          + +CVCGG  RRVEHAR XXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP
Sbjct: 1  MSQCVCGGGGRRVEHARXXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 56

[Close]
BLAST of CsGy3G018250.1 vs. NCBI nr
Match: XP_011658165.1 (PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus] >KGN49136.1 hypothetical protein Csa_6G515450 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 51/88 (57.95%), Postives = 56/88 (63.64%), Query Frame = 0 

Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGXXRRVEHARKXXXXXALSHE 67
           RNFSRKGM RG NKI QDN D  EA GESIS IG        ++    R+     ALSHE
Sbjct: 63  RNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREELVVGALSHE 122

Query: 68  TAISSTQGNDDVRKLRIRRNSLKRSTQP 96
           TAISSTQ +    KL +RRNS KRSTQP
Sbjct: 123 TAISSTQRSSGAEKLSMRRNSFKRSTQP 150

[Close]
BLAST of CsGy3G018250.1 vs. NCBI nr
Match: XP_008439957.1 (PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 51/100 (51.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 7   ERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHA 66
           +RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX      
Sbjct: 52  KRNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXX 111

Query: 67  RKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
             X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 112 XXXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 150

[Close]
BLAST of CsGy3G018250.1 vs. NCBI nr
Match: XP_008439956.1 (PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 51/99 (51.52%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHAR 67
           RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX       
Sbjct: 62  RNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 68  KXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
            X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 122 XXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 159

[Close]
BLAST of CsGy3G018250.1 vs. TrEMBL
Match: tr|A0A0A0L721|A0A0A0L721_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203780 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 40 IGKCVCGGXXRRVEHARKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
          + +CVCGG  RRVEHAR XXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP
Sbjct: 1  MSQCVCGGGGRRVEHARXXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 56

[Close]
BLAST of CsGy3G018250.1 vs. TrEMBL
Match: tr|A0A0A0KN31|A0A0A0KN31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515450 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 51/88 (57.95%), Postives = 56/88 (63.64%), Query Frame = 0 

Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGXXRRVEHARKXXXXXALSHE 67
           RNFSRKGM RG NKI QDN D  EA GESIS IG        ++    R+     ALSHE
Sbjct: 63  RNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREELVVGALSHE 122

Query: 68  TAISSTQGNDDVRKLRIRRNSLKRSTQP 96
           TAISSTQ +    KL +RRNS KRSTQP
Sbjct: 123 TAISSTQRSSGAEKLSMRRNSFKRSTQP 150

[Close]
BLAST of CsGy3G018250.1 vs. TrEMBL
Match: tr|A0A1S3B0R1|A0A1S3B0R1_CUCME (uncharacterized protein LOC103484588 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484588 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-08
Identity = 51/100 (51.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 7   ERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHA 66
           +RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX      
Sbjct: 52  KRNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXX 111

Query: 67  RKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
             X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 112 XXXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 150

[Close]
BLAST of CsGy3G018250.1 vs. TrEMBL
Match: tr|A0A1S3B0M0|A0A1S3B0M0_CUCME (uncharacterized protein LOC103484588 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484588 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 51/99 (51.52%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHAR 67
           RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX       
Sbjct: 62  RNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 68  KXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
            X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 122 XXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 159

The following BLAST results are available for this feature:
BLAST of CsGy3G018250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57523.15.6e-1589.29hypothetical protein Csa_3G203780 [Cucumis sativus][more]
XP_011658165.11.4e-1357.95PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus] >KGN49136.1 hy... [more]
XP_008439957.18.7e-0851.00PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo][more]
XP_008439956.11.1e-0751.52PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo][more]
BLAST of CsGy3G018250.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G018250.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G018250.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L721|A0A0A0L721_CUCSA3.7e-1589.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203780 PE=4 SV=1[more]
tr|A0A0A0KN31|A0A0A0KN31_CUCSA9.2e-1457.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515450 PE=4 SV=1[more]
tr|A0A1S3B0R1|A0A1S3B0R1_CUCME5.8e-0851.00uncharacterized protein LOC103484588 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3B0M0|A0A1S3B0M0_CUCME7.5e-0851.52uncharacterized protein LOC103484588 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G018250CsGy3G018250gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G018250.1CsGy3G018250.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018250.1.CDS.3CsGy3G018250.1.CDS.3CDS
CsGy3G018250.1.CDS.2CsGy3G018250.1.CDS.2CDS
CsGy3G018250.1.CDS.1CsGy3G018250.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G018250.1.exon.3CsGy3G018250.1.exon.3exon
CsGy3G018250.1.exon.2CsGy3G018250.1.exon.2exon
CsGy3G018250.1.exon.1CsGy3G018250.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..95