CsGy3G018250 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G018250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 14403728 .. 14404459 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGTTATTACTCCTGGAGAGGTGAACAGTGGATTATAAAAGTCAGTGATTTTTTATTAAACTAACAGATTTCAGTACAATAAAAAATCTAATAGCTTCATCATCAATATGGACAATCTTTAACAACAAGGAAATTTCTCACAATTCAAGAATTTCAGTGAGTCTCTTTTTTATTTTCTTTTTTACTGAAAAGAAGAAAAAAAAAAGAGTAGAAAATTTGATGTATCAAAGACGTTATTAAAATAGGAATTAAGCATTGAAAATAATAATTATCGTAATATATGAAAATTGCAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAAGTTACTTTAACTTCGGAATGCACGTGCTTAGCACTTGCAAGTTCCTACCAAAACGAAACCATTAATATTTGGAGCTCTCATTTTTTAAAATTTCTAATGAACCGACTAGACCCAAAATGGGATATGGGTTATGCTATTTTTAATTAATTTTGCTCATGAAAAATGTCGCAGTGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

mRNA sequence

GGTGTTATTACTCCTGGAGAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAATGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

Coding sequence (CDS)

GGTGTTATTACTCCTGGAGAGAGGAATTTTAGTAGAAAAGGAATGTTTCGTGGCAGAAACAAGATAGAGCAAGATAATGATGATGATGGTGAAGCAGAAGGAGAGTCCATATCTCGAATAGGTAAATGTGTGTGTGGGGGTGGGGGAAGGAGGGTCGAGCACGCTAGAAAAGCAGGCGGTGGTGGTGCACTGAGCCATGAGACAGCGATTAGTAGCACCCAGGGAAACGACGACGTCAGAAAGCTTCGTATTAGAAGAAATAGCTTGAAGCGGTCTACACAACCTTAA

Protein sequence

GVITPGERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGGGRRVEHARKAGGGGALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP

Homology

[Close]

BLAST of CsGy3G018250 vs. NCBI nr
Match: KGN57523.1 (hypothetical protein Csa_3G203780 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 5.6e-15
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 40 IGKCVCGGXXRRVEHARKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
          + +CVCGG  RRVEHAR XXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP
Sbjct: 1  MSQCVCGGGGRRVEHARXXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 56

[Close]

BLAST of CsGy3G018250 vs. NCBI nr
Match: XP_011658165.1 (PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus] >KGN49136.1 hypothetical protein Csa_6G515450 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 51/88 (57.95%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGXXRRVEHARKXXXXXALSHE 67
           RNFSRKGM RG NKI QDN D  EA GESIS IG        ++    R+     ALSHE
Sbjct: 63  RNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREELVVGALSHE 122

Query: 68  TAISSTQGNDDVRKLRIRRNSLKRSTQP 96
           TAISSTQ +    KL +RRNS KRSTQP
Sbjct: 123 TAISSTQRSSGAEKLSMRRNSFKRSTQP 150

[Close]

BLAST of CsGy3G018250 vs. NCBI nr
Match: XP_008439957.1 (PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.7e-08
Identity = 51/100 (51.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 7   ERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHA 66
           +RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX      
Sbjct: 52  KRNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXX 111

Query: 67  RKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
             X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 112 XXXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 150

[Close]

BLAST of CsGy3G018250 vs. NCBI nr
Match: XP_008439956.1 (PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 51/99 (51.52%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHAR 67
           RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX       
Sbjct: 62  RNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 68  KXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
            X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 122 XXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 159

[Close]

BLAST of CsGy3G018250 vs. TrEMBL
Match: tr|A0A0A0L721|A0A0A0L721_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203780 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 40 IGKCVCGGXXRRVEHARKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
          + +CVCGG  RRVEHAR XXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP
Sbjct: 1  MSQCVCGGGGRRVEHARXXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 56

[Close]

BLAST of CsGy3G018250 vs. TrEMBL
Match: tr|A0A0A0KN31|A0A0A0KN31_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515450 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 51/88 (57.95%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIGKCVCGGXXRRVEHARKXXXXXALSHE 67
           RNFSRKGM RG NKI QDN D  EA GESIS IG        ++    R+     ALSHE
Sbjct: 63  RNFSRKGMLRGGNKIGQDNGDGDEAGGESISPIGGGGSSTLEKQAVVGREELVVGALSHE 122

Query: 68  TAISSTQGNDDVRKLRIRRNSLKRSTQP 96
           TAISSTQ +    KL +RRNS KRSTQP
Sbjct: 123 TAISSTQRSSGAEKLSMRRNSFKRSTQP 150

[Close]

BLAST of CsGy3G018250 vs. TrEMBL
Match: tr|A0A1S3B0R1|A0A1S3B0R1_CUCME (uncharacterized protein LOC103484588 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484588 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-08
Identity = 51/100 (51.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 7   ERNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHA 66
           +RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX      
Sbjct: 52  KRNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXX 111

Query: 67  RKXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
             X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 112 XXXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 150

[Close]

BLAST of CsGy3G018250 vs. TrEMBL
Match: tr|A0A1S3B0M0|A0A1S3B0M0_CUCME (uncharacterized protein LOC103484588 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484588 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 51/99 (51.52%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 8   RNFSRKGMFRGRNKIEQDNDDDGEAEGESISRIG-----------KCVCGGXXRRVEHAR 67
           RNFSRKGM RG +KI QDN D  EA GESIS +G                 XX       
Sbjct: 62  RNFSRKGMLRGGSKIGQDNGDGDEA-GESISPLGXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 68  KXXXXXALSHETAISSTQGNDDVRKLRIRRNSLKRSTQP 96
            X    ALSHETAISSTQ +    KL IRRNS KRS QP
Sbjct: 122 XXVGVGALSHETAISSTQWSVGAEKLSIRRNSFKRSPQP 159

The following BLAST results are available for this feature:

BLAST of CsGy3G018250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57523.1	5.6e-15	89.29	hypothetical protein Csa_3G203780 [Cucumis sativus]	[more]
XP_011658165.1	1.4e-13	57.95	PREDICTED: uncharacterized protein LOC105435952 [Cucumis sativus] >KGN49136.1 hy...	[more]
XP_008439957.1	8.7e-08	51.00	PREDICTED: uncharacterized protein LOC103484588 isoform X2 [Cucumis melo]	[more]
XP_008439956.1	1.1e-07	51.52	PREDICTED: uncharacterized protein LOC103484588 isoform X1 [Cucumis melo]	[more]

BLAST of CsGy3G018250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G018250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G018250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L721\|A0A0A0L721_CUCSA	3.7e-15	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G203780 PE=4 SV=1	[more]
tr\|A0A0A0KN31\|A0A0A0KN31_CUCSA	9.2e-14	57.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G515450 PE=4 SV=1	[more]
tr\|A0A1S3B0R1\|A0A1S3B0R1_CUCME	5.8e-08	51.00	uncharacterized protein LOC103484588 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B0M0\|A0A1S3B0M0_CUCME	7.5e-08	51.52	uncharacterized protein LOC103484588 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G018250.1	CsGy3G018250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G018250	Csa3G203780	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G018250	CsaV3_3G018450	Cucumber (Chinese Long) v3	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G018250	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G018250	Wild cucumber (PI 183967)	cgybcpiB153
CsGy3G018250	Silver-seed gourd	carcgybB0221
CsGy3G018250	Silver-seed gourd	carcgybB0380
CsGy3G018250	Cucumber (Chinese Long) v3	cgybcucB156
CsGy3G018250	Watermelon (97103) v2	cgybwmbB190
CsGy3G018250	Watermelon (97103) v2	cgybwmbB206
CsGy3G018250	Wax gourd	cgybwgoB271
CsGy3G018250	Wax gourd	cgybwgoB298
CsGy3G018250	Cucumber (Gy14) v2	cgybcgybB115
CsGy3G018250	Cucurbita maxima (Rimu)	cgybcmaB295
CsGy3G018250	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G018250	Cucurbita maxima (Rimu)	cgybcmaB379
CsGy3G018250	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G018250	Cucurbita moschata (Rifu)	cgybcmoB270
CsGy3G018250	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G018250	Cucurbita moschata (Rifu)	cgybcmoB352
CsGy3G018250	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G018250	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G018250	Cucurbita pepo (Zucchini)	cgybcpeB336
CsGy3G018250	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G018250	Cucumber (Chinese Long) v2	cgybcuB151
CsGy3G018250	Bottle gourd (USVL1VR-Ls)	cgyblsiB173
CsGy3G018250	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G018250	Melon (DHL92) v3.5.1	cgybmeB160
CsGy3G018250	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G018250	Melon (DHL92) v3.6.1	cgybmedB160
CsGy3G018250	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G018250	Watermelon (Charleston Gray)	cgybwcgB197
CsGy3G018250	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G018250	Watermelon (97103) v1	cgybwmB229
CsGy3G018250	Watermelon (97103) v1	cgybwmB253