CsGy3G017640.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G017640.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 13564921 .. 13565973 (-)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTGTGAGTGACAAGCTGTTTATGGTTCTTGCAGCAAGACGATCACGACCAACCGATTATTTTCTCAAATGAAGTTCACATCTGTGCAGAAGCAGCAGTAAGTTATTTGGTTAAAATCTAACTTTTTATTCCATGTAATCGTTGGCTCACTGTTTAATGTATAAAGTGTGTAATCGTTAGAAAGTTTGGATTTGATTTGTATAAAATCAGTATTGCTTTCAAGGATGGATATGTGTTTATTAGTTTTTTTTTTCTCCTTTTTTAATTTTTTTAAATGGTGTGTTTATTTATTGATGGCTGCCAACTTTGCTCTTAAATCTGTTGTGAAAGATTTTAGATTAATTATTTGCTTATGAAATATCAAAACATTTTGAAAGAATTGTATGGAAAATCTTAAGTGTATAACATAGCAAAACAAAATGAAAAAAAATCAAATTTACTAGTCGAAGCACACATATCAATTATCAATCATAAAGTTAGGTTCACTGTTCAGGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTGTACATAACTAAAATTAAATTAATAGTTTTGGACAAACAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

mRNA sequence

ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTAAGCAGCAGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Coding sequence (CDS)

ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTAAGCAGCAGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Protein sequence

MENGWINCVCHQTPFTVRKLSSSRSSSEKIMIAIGNPKFNLSVMGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVRPGERDGAAHSVETSSLTAT

Homology

[Close]

BLAST of CsGy3G017640.1 vs. NCBI nr
Match: KGN57445.1 (hypothetical protein Csa_3G186715 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 44 MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 89
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 45

[Close]

BLAST of CsGy3G017640.1 vs. TrEMBL
Match: tr|A0A0A0L650|A0A0A0L650_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 44 MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 89
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 45

The following BLAST results are available for this feature:

BLAST of CsGy3G017640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57445.1	1.5e-15	100.00	hypothetical protein Csa_3G186715 [Cucumis sativus]	[more]

BLAST of CsGy3G017640.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G017640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G017640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L650\|A0A0A0L650_CUCSA	9.6e-16	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy3G017640	CsGy3G017640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy3G017640.1	CsGy3G017640.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017640.1.CDS.4	CsGy3G017640.1.CDS.4	CDS
CsGy3G017640.1.CDS.3	CsGy3G017640.1.CDS.3	CDS
CsGy3G017640.1.CDS.2	CsGy3G017640.1.CDS.2	CDS
CsGy3G017640.1.CDS.1	CsGy3G017640.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy3G017640.1.exon.4	CsGy3G017640.1.exon.4	exon
CsGy3G017640.1.exon.3	CsGy3G017640.1.exon.3	exon
CsGy3G017640.1.exon.2	CsGy3G017640.1.exon.2	exon
CsGy3G017640.1.exon.1	CsGy3G017640.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..122