CsGy3G017640 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G017640
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 13564921 .. 13565973 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTGTGAGTGACAAGCTGTTTATGGTTCTTGCAGCAAGACGATCACGACCAACCGATTATTTTCTCAAATGAAGTTCACATCTGTGCAGAAGCAGCAGTAAGTTATTTGGTTAAAATCTAACTTTTTATTCCATGTAATCGTTGGCTCACTGTTTAATGTATAAAGTGTGTAATCGTTAGAAAGTTTGGATTTGATTTGTATAAAATCAGTATTGCTTTCAAGGATGGATATGTGTTTATTAGTTTTTTTTTTCTCCTTTTTTAATTTTTTTAAATGGTGTGTTTATTTATTGATGGCTGCCAACTTTGCTCTTAAATCTGTTGTGAAAGATTTTAGATTAATTATTTGCTTATGAAATATCAAAACATTTTGAAAGAATTGTATGGAAAATCTTAAGTGTATAACATAGCAAAACAAAATGAAAAAAAATCAAATTTACTAGTCGAAGCACACATATCAATTATCAATCATAAAGTTAGGTTCACTGTTCAGGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTGTACATAACTAAAATTAAATTAATAGTTTTGGACAAACAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

mRNA sequence

ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTAAGCAGCAGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Coding sequence (CDS)

ATGGAAAATGGCTGGATAAATTGCGTATGTCACCAAACGCCTTTCACTGTGAGGAAGTTAAGCAGCAGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Protein sequence

MENGWINCVCHQTPFTVRKLSSSRSSSEKIMIAIGNPKFNLSVMGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVRPGERDGAAHSVETSSLTAT
Homology
[Close]
BLAST of CsGy3G017640 vs. NCBI nr
Match: KGN57445.1 (hypothetical protein Csa_3G186715 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 44 MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 89
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 45

[Close]
BLAST of CsGy3G017640 vs. TrEMBL
Match: tr|A0A0A0L650|A0A0A0L650_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 44 MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 89
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAH 45

The following BLAST results are available for this feature:
BLAST of CsGy3G017640 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57445.11.5e-15100.00hypothetical protein Csa_3G186715 [Cucumis sativus][more]
BLAST of CsGy3G017640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G017640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G017640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L650|A0A0A0L650_CUCSA9.6e-16100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G017640.1CsGy3G017640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..122

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G017640CsaV3_3G017770Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G017640Wild cucumber (PI 183967)cgybcpiB110
CsGy3G017640Silver-seed gourdcarcgybB0190
CsGy3G017640Silver-seed gourdcarcgybB0758
CsGy3G017640Watermelon (97103) v2cgybwmbB206
CsGy3G017640Wax gourdcgybwgoB271
CsGy3G017640Cucurbita maxima (Rimu)cgybcmaB312
CsGy3G017640Cucurbita maxima (Rimu)cgybcmaB371
CsGy3G017640Cucurbita moschata (Rifu)cgybcmoB285
CsGy3G017640Cucurbita moschata (Rifu)cgybcmoB342
CsGy3G017640Cucurbita pepo (Zucchini)cgybcpeB383
CsGy3G017640Cucurbita pepo (Zucchini)cgybcpeB401
CsGy3G017640Cucumber (Chinese Long) v2cgybcuB109
CsGy3G017640Bottle gourd (USVL1VR-Ls)cgyblsiB198
CsGy3G017640Melon (DHL92) v3.5.1cgybmeB206
CsGy3G017640Melon (DHL92) v3.5.1cgybmeB210
CsGy3G017640Melon (DHL92) v3.6.1cgybmedB213
CsGy3G017640Melon (DHL92) v3.6.1cgybmedB215
CsGy3G017640Watermelon (Charleston Gray)cgybwcgB214
CsGy3G017640Watermelon (97103) v1cgybwmB229