CsGy3G014800.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy3G014800.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 10881851 .. 10885824 (+)
Sequence length483
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGGTGAAAGCAAGTCATAGAGGAATCTATTAAACCATGAAAATTTAGAGTCATATGGTAACTCTTTATTTAATCAAAAGTGTGTGTATATATATATATATTTATATATTTTCATTTGGCATGATCTGGTTTCTACGTTTGTGTGGAAGCAAGCTTGTAAAGAGTCTAGTAAAACTTATAATGGCTCTGCTTGTAATAAATAAAGTTTATTATCAACTAAGAAGCTTACTTTGCTATCCTCTATTTGCAACTTTTCATCGTATGTTTCTCTTCTTGACTCACCTTTAACTTCTTGTTGATCAAGCAGTTGGGTTGACAGTTTTCTTTTAAGCATTTCATTACACATATATATGGTTATTAATTTTGCTACAAAACATTTGATTCATATGGAGAATTCTTATTTATTATATTGGTTATAGAAATTTCTACATTCTTTTGTTTCTTCCTATTATATCGGTCCCATCCGATAATGGTGTAGCATGTAGAGATATTAACACTCAGTACCCCTTGACATCCTAAACTCACAATTCAAAGTATATAATGGTATTCAAGGGAGCTTTCACTCTAGAATTTCATATTTAAAAAAAAAAAAAATTCATCACCAATTTATCCTTCCATTGTTAATATATTAGTAGGATTTTCTTATTACTTAGTAGAAGTTCTATGATCATTACGGATTAAAATAAAGCAACGCGAAAGGAAAAAAAAATTATTTACATACATATATAGTTATTTTTAACGGTGGATCCAAATCTATTTCGCTTAACGGGTTTTTGGTTCTTGATCATTTCTATATTTATTGTACTAAAAAATAATTTTAAAATGAATCGTTATATTATTAAAATTTTATAGTTTGGAGTAGAATCTAATCGATGTAAAACGAATGACTAGTTAACTTAAAAAAAAATAAAAATATATATTATAATATCAACTTTATTTAAAATTCTTTTAAAAAGAAATTCTCCCACAAATATTTTCACTCAATTCTTTTATTAATATTAAAAAAAAGACTTACTAAAAATATACCATAATTATTCCAAAACTTATTATTTATTATAATTGGACCATATCTCTTCAAAAAAAAAAGACGATAATGATTAAATTTATTATGGCAAAAAAATGGACTTCTAACCAAAATAATTGAGAATGTGAAAGTATACAGTTGTTCGTAATAAAATTTATTTGTTTTGTAACGTAATTTAAAATTTATGTTTAAATTAAACGTTTTGAGTTTAATCTTTAATATAAAAATTCATTTTATATTATAATAGTTTTCAATTTAACTTTCTCTTTCTTATTGTTTTCACGATCTCATATTTTAATTGAAAAAAATAGCTAAAAAAATATGTATTTGATTTAACTTTGAAAGAATTTAATTTTAAAAAAATATTTTTATTAAAATTTGAATTATTTGATAATAGTTAAAAAATATTAACTTTAAAATTTTATTTTAAACAATTGTTTAAGCTTAAATAAAAAGGATGTGCTTAACTTATAATTAAATTCGGGTGTATATTTATTGTATTTAATTTGTAAGAAGGATAAAGAAAAAAGAGAGAAAATAAAGTTTAGTACGACTTTGAAAGGCTTAATTCTGGACCTTACACTCCCAATACATCTTAAGATTTGTCTTTTTGATGATTAAAAAAAACTAATTTTGATGTAGGGAAGAAATAGAACGAATTTAATTAAATGATGTTGTGTCTTGTTATTGGATTAAGAAGTAAGGGGACTGAGTGAGACTTTATAACAAATATGGTAATAACATGGATGGAAATGCATATGCTCTAACTGATGTGGTACATTAATATTACACTTCTACTATAACTCAAGATCAGTTTTCTCATATTTATAAATGTCTCTACATTGTTGTGCTAAAGTGTTGTAATTAAGTTTGATTACCATATATATAATTGTTCCTAAAATTTATTTTAAGCAATACTTAAATACATTCATACATATACCAATCTTTATGTGCTTGCTTTCATTACAACATACCAAAAAAAATTATAATATTCTAAACAAGAAGTAAAATGAACATAGATACGCGAAATATAGAAGATTAATTTTTAGTCTATAAGTTTTGAATTTAATTTTGATGTGCTTTATAAAACTAGATTCATATTAACATTTATTACTTTGGTGATAGGCATAATGATAAGTACCTATTTGAATTTATGATAATCTATCGATAATAGAAAGTAAATAATTTGTAAATGTATTCAAATGTTTTCAAATGAATCACATAAATTAGTATTCATTCTAACTAAAACAATTGATTGATAAGCAAACTCTATAAAATGAAACACATATTAATTAAAAAGTAAAAATATGAAAATAAGAATTGAAGCTAAAAATGTAAAAAAAAAAAACCCTACCAACTTTGTTCTTTGTTCTTTGTCTTTGAAAAGACGAGTCAATGCAAAGATAACGTTGTTAGATTAAACAGAATATATCCCTTTCTACGGTTTCTCAATTTTGGGTATGCTCAACTTGTTGGCAAACTAATTAATTACCAAGTGTTTGCTTTGTTTTCGTTTTTTTTTTCAATTTACTTCTTTTTTCTTTAAATACTTCCATTTTAATTTTTGCTTGGTTTGATAAATGTCTAGGAAGTGTTTAACAACTGACAGGTAATTGAGTTGTATGGGTAAAAAAATTCACCCACCATTTGAGTGTATCTATAATTCAAGAGATTTAATTAACTAATTATATTTTTCATCTATTTATTCATGTCAACTCTCCTAATTACTCTCACTTATAATAATTATCGACACAACTCAACAATTAAAAAACAACCCTAATCAAATATCATATCGATAAATTATATGAAATTTAAAGGAACAATATTAATCACAATCATAGACATAGTAAATAGGTCAATAAAATTCCTCCACTATCCCTATATAGAAGAACATCTCCAACTACTTTATTCTCAATCCAAAAGGACTACTTATCTAAACTAAGTAACATAGGCAGATATTTTTTAATTATTGATAACACGAATCATATTATAAATAAAGTAACTCAATCAAAGGATACGTTTTTTTTACTTTGAACGTCTATATAATAATTACAATTTTTTTAATGTATATAGATCTAGATGAACCCAACAAATATACTCCCACTTACAAAATCTAATAAAAAAAATTATTTTCTACTAGTTTAACCTTTTATTTAATGAAAATAAAAAGCTCTTCAAGTAAACATTCCAATATGAGAGTCAAGTATACATTCTAATGGAAGCACCGAAAGTCTAAAGATTCCACAAATAATTTGAAAGAATAATAATCTTTCAAAACCATTATTCTTAGTAGAACAAATTCCAATTTTCTTAGCTTATTGAGAGATAAAAGTAATTTCCAACAAATTGGTAAGCCCAACCATTTCCAAAGTTTTTCTTTTTATATATATAAATAGTGGTTCATCTTCTTCATTTTCTATCCCCAAACCAAGAAAACCTAACCTTGAGAACACACAAAGTGCCATGGCAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

mRNA sequence

ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Coding sequence (CDS)

ATGGCAGCTCACAGAGATCTATCTCGTAATGATCTCCCTAAAATTGGATTGGAAGGCTTTGCCCTTATAGAAGAAATCTACTGCAAACGACTACCAAAGAGGAGACCAAGGCAAGTTGCTCTAGCTCCACCACAATCAATCATAGCAATTCATCCTCCACAAAGGATGGCCGAGTCATCACCGCCTATTCGTTGTAATCAATTGGCTAAAACTCACGAAGCTCGTAATAACGATCTCGCTAGAATTGGATTGGAAGGCTTTATCTTTATAGAAGAACTCTACGACCGACCAAGGAGGAAGCCGAGGCATGTTGCTCCAGCTCCCCCGCAACCAGTCGTAGCAATTCATCCTCCACAAAGGAAGGTCGAGTCATCACCATCTATTCGTTGTGATCAATTGGCTAAAGCTCATGGAGGAATTATCATTAAAGAATGGGGTGGAAAGCGAGTCAACAAAGTTGTCCAAAAAACAGAGAGACCATAA

Protein sequence

MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIAIHPPQRMAESSPPIRCNQLAKTHEARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQLAKAHGGIIIKEWGGKRVNKVVQKTERP
Homology
[Close]
BLAST of CsGy3G014800.1 vs. NCBI nr
Match: KGN57135.1 (hypothetical protein Csa_3G164540 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 74  ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL 133
           ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL
Sbjct: 3   ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL 62

Query: 134 AKAHGGIIIKEWGGKRVNKVVQKTERP 161
           AKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 63  AKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]
BLAST of CsGy3G014800.1 vs. NCBI nr
Match: KGN57134.1 (hypothetical protein Csa_3G164530 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60
          MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60

Query: 61 XXXXCNQLAKTHEARN 77
          XXXXCNQLAKTHE  +
Sbjct: 61 XXXXCNQLAKTHEGES 76

[Close]
BLAST of CsGy3G014800.1 vs. TrEMBL
Match: tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.3e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 74  ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL 133
           ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL
Sbjct: 3   ARNNDLARIGLEGFIFIEELYDRPRRKPRHVAPAPPQPVVAIHPPQRKVESSPSIRCDQL 62

Query: 134 AKAHGGIIIKEWGGKRVNKVVQKTERP 161
           AKAHGGIIIKEWGGKRVNKVVQKTERP
Sbjct: 63  AKAHGGIIIKEWGGKRVNKVVQKTERP 89

[Close]
BLAST of CsGy3G014800.1 vs. TrEMBL
Match: tr|A0A0A0L7Z0|A0A0A0L7Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164530 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.2e-23
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0 

Query: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60
          MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX
Sbjct: 1  MAAHRDLSRNDLPKIGLEGFALIEEIYCKRLPKRRPRQVALAPPQSIIXXXXXXXXXXXX 60

Query: 61 XXXXCNQLAKTHEARN 77
          XXXXCNQLAKTHE  +
Sbjct: 61 XXXXCNQLAKTHEGES 76

The following BLAST results are available for this feature:
BLAST of CsGy3G014800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57135.11.4e-42100.00hypothetical protein Csa_3G164540 [Cucumis sativus][more]
KGN57134.11.2e-2296.05hypothetical protein Csa_3G164530 [Cucumis sativus][more]
BLAST of CsGy3G014800.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G014800.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G014800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5A8|A0A0A0L5A8_CUCSA9.3e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164540 PE=4 SV=1[more]
tr|A0A0A0L7Z0|A0A0A0L7Z0_CUCSA8.2e-2396.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164530 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy3G014800CsGy3G014800gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G014800.1.exon.1CsGy3G014800.1.exon.1exon
CsGy3G014800.1.exon.2CsGy3G014800.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy3G014800.1.CDS.1CsGy3G014800.1.CDS.1CDS
CsGy3G014800.1.CDS.2CsGy3G014800.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy3G014800.1CsGy3G014800.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33484FAMILY NOT NAMEDcoord: 9..73
coord: 74..148