CsGy3G007980.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGTGAAGCAAAGCTAAGGCGAGATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATGTATTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTTTGTTTCAATTCTCTTAACATTCCCACTCAAACTCAAACTCAAACATATTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCTCAAAACTCTCTCCTCCCATCCCCTCTCAGAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTGATAAAACTCAGCTTGGAGCTATGGTTTTGAGAAAGAGAGGAGTGTTAATTGAGAAGGAATGGTTTTGTTGGTTGGGAAAATTGAGTTTTAGGAGCAAAGGGGAAGTTGGGTCTGACTATGGTGCTGTATTTCCTTCTTCTTTGGATAAGGAGAAAAGCAGTTCAAGGATGAAAGTTGCTGTGAACCAGAAAGGTGGGAGCTTTTCTTCTTGTTTTGTCCAAGCCAAGACTGAGTTTTGGGTAATTTTAGAATAA ATGGGAAGTGAAGCAAAGCTAAGGCGAGATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATGTATTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTTTGTTTCAATTCTCTTAACATTCCCACTCAAACTCAAACTCAAACATATTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCTCAAAACTCTCTCCTCCCATCCCCTCTCAGAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTGATAAAACTCAGCTTGGAGCTATGGTTTTGAGAAAGAGAGGAGTGTTAATTGAGAAGGAATGGTTTTGTTGGTTGGGAAAATTGAGTTTTAGGAGCAAAGGGGAAGTTGGGTCTGACTATGGTGCTGTATTTCCTTCTTCTTTGGATAAGGAGAAAAGCAGTTCAAGGATGAAAGTTGCTGTGAACCAGAAAGGTGGGAGCTTTTCTTCTTGTTTTGTCCAAGCCAAGACTGAGTTTTGGGTAATTTTAGAATAA ATGGGAAGTGAAGCAAAGCTAAGGCGAGATTATGAAGTACCAAAGCTTCCATTACTTGCAATTACAGCAATGGAGTCTCCAGATCGTTCTGGAATGCTAACCCCACCAATGTATTCCTCAGTTTCAGTCCCATTTCGATGGGAAGAAGAACCTGGCAAGCCCAGGTTTTGTTTCAATTCTCTTAACATTCCCACTCAAACTCAAACTCAAACATATTCCCTTGAACTTCCACCAAGATTGTTACTAATGGATCCCAAAATCTCAAAACTCTCTCCTCCCATCCCCTCTCAGAAAGGGTTTTTCCAGTTTCATAAGCACTGTTGTAGCTCATTCAGATTTGATAAAACTCAGCTTGGAGCTATGGTTTTGAGAAAGAGAGGAGTGTTAATTGAGAAGGAATGGTTTTGTTGGTTGGGAAAATTGAGTTTTAGGAGCAAAGGGGAAGTTGGGTCTGACTATGGTGCTGTATTTCCTTCTTCTTTGGATAAGGAGAAAAGCAGTTCAAGGATGAAAGTTGCTGTGAACCAGAAAGGTGGGAGCTTTTCTTCTTGTTTTGTCCAAGCCAAGACTGAGTTTTGGGTAATTTTAGAATAA MGSEAKLRRDYEVPKLPLLAITAMESPDRSGMLTPPMYSSVSVPFRWEEEPGKPRFCFNSLNIPTQTQTQTYSLELPPRLLLMDPKISKLSPPIPSQKGFFQFHKHCCSSFRFDKTQLGAMVLRKRGVLIEKEWFCWLGKLSFRSKGEVGSDYGAVFPSSLDKEKSSSRMKVAVNQKGGSFSSCFVQAKTEFWVILE
BLAST of CsGy3G007980.1 vs. NCBI nr
Match: XP_011650674.1 (PREDICTED: uncharacterized protein At4g00950 isoform X1 [Cucumis sativus] >KGN56415.1 hypothetical protein Csa_3G119480 [Cucumis sativus]) HSP 1 Score: 399.8 bits (1026), Expect = 5.3e-108 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. NCBI nr
Match: XP_004133807.2 (PREDICTED: uncharacterized protein At4g00950 isoform X2 [Cucumis sativus]) HSP 1 Score: 399.8 bits (1026), Expect = 5.3e-108 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. NCBI nr
Match: XP_011650675.1 (PREDICTED: uncharacterized protein At4g00950 isoform X3 [Cucumis sativus]) HSP 1 Score: 367.5 bits (942), Expect = 2.9e-98 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. NCBI nr
Match: XP_011650676.1 (PREDICTED: uncharacterized protein At4g00950 isoform X4 [Cucumis sativus]) HSP 1 Score: 367.5 bits (942), Expect = 2.9e-98 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. NCBI nr
Match: XP_023527385.1 (uncharacterized protein At4g00950-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 299.3 bits (765), Expect = 9.7e-78 Identity = 151/201 (75.12%), Postives = 167/201 (83.08%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TAIR10
Match: AT4G27810.1 (unknown protein) HSP 1 Score: 53.5 bits (127), Expect = 1.7e-07 Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TAIR10
Match: AT4G00950.1 (Protein of unknown function (DUF688)) HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06 Identity = 61/215 (28.37%), Postives = 92/215 (42.79%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TAIR10
Match: AT5G53030.1 (unknown protein) HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05 Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TAIR10
Match: AT2G46535.1 (unknown protein) HSP 1 Score: 46.2 bits (108), Expect = 2.7e-05 Identity = 29/84 (34.52%), Postives = 41/84 (48.81%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TAIR10
Match: AT3G61840.1 (Protein of unknown function (DUF688)) HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04 Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. Swiss-Prot
Match: sp|Q9M160|Y4095_ARATH (Uncharacterized protein At4g00950 OS=Arabidopsis thaliana OX=3702 GN=At4g00950 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 4.4e-05 Identity = 61/215 (28.37%), Postives = 92/215 (42.79%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TrEMBL
Match: tr|A0A0A0L338|A0A0A0L338_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119480 PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 3.5e-108 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TrEMBL
Match: tr|A0A251QIC1|A0A251QIC1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G190500 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 8.8e-27 Identity = 89/212 (41.98%), Postives = 116/212 (54.72%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TrEMBL
Match: tr|A0A2N9ILJ5|A0A2N9ILJ5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52841 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25 Identity = 88/211 (41.71%), Postives = 113/211 (53.55%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TrEMBL
Match: tr|A0A2P5B0T3|A0A2P5B0T3_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_282290 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 4.8e-25 Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 0
BLAST of CsGy3G007980.1 vs. TrEMBL
Match: tr|B9SBF5|B9SBF5_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0716950 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 3.1e-24 Identity = 89/226 (39.38%), Postives = 118/226 (52.21%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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