CsGy2G023620.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G023620.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 31514509 .. 31514694 (-)
Sequence length	186

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

mRNA sequence

ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

Coding sequence (CDS)

ATGCGAACGACGTCGTATAAGGGAAAACGACATGGTTTGGGAGGTGTGTGTGAATCCATTCATCATCGTCATGTTGGTGATGATACCGGGATGAAGCAAAATTTAGGGCGGGTCGAAGCGGAGCTCTCATCCCCATTTGTTTGTGTGCTCCATTGCCTCTCCGTCCAACACTTCTCTGCCTTTTAA

Protein sequence

MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSAF

Homology

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BLAST of CsGy2G023620.1 vs. NCBI nr
Match: KGN62987.1 (hypothetical protein Csa_2G382600 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60
          MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA
Sbjct: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of CsGy2G023620.1 vs. TrEMBL
Match: tr|A0A0A0LQD9|A0A0A0LQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382600 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60
          MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA
Sbjct: 1  MRTTSYKGKRHGLGGVCESIHHRHVGDDTGMKQNLGRVEAELSSPFVCVLHCLSVQHFSA 60

Query: 61 F 62
          F
Sbjct: 61 F 61

The following BLAST results are available for this feature:

BLAST of CsGy2G023620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62987.1	2.9e-28	100.00	hypothetical protein Csa_2G382600 [Cucumis sativus]	[more]

BLAST of CsGy2G023620.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G023620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G023620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQD9\|A0A0A0LQD9_CUCSA	1.9e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G023620	CsGy2G023620	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023620.1.CDS.1	CsGy2G023620.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023620.1.exon.1	CsGy2G023620.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G023620.1	CsGy2G023620.1-protein	polypeptide