CsGy2G023400.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G023400.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 31375376 .. 31376418 (-)
Sequence length	543

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTTCTTCTAAGGAAATACGTCATCTCTAACTTGGATACTGACAATTAAATTTTCTTTTCTTTTTTATTTATTTTCTTTTCACAAATAAAACACACAAACAACCCCACTCTTTACCATCTCTCATAGGTAAATGATGACAATTCCACAGCCAAAAGAAGCTGTACAGTGGAAAAAAAAAATCATCATGCATAAAGCTTCATGTTGGCAGAGCCATTTTCAAACAAAATTATTGGTTCATTATCTTAGGCTTGTTCCCCCACTATGATTGTTACTGTTATATGCGATTAAAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGGTTTGTAATTTTTATTACCTTCTCCTTCCACTTTAATCAACCAAACCCTGTTTCCTACTATTTTCAAACTGGTTACATTCTAAGAAATTCTTTTAGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATGTACAACAAATGAGACATCATGGATTTTTTTTTCTTTTATGAATATCAGAATCTGAGAATAGTTTGTTCATTCAAGATTTTGTTAAAATAACAGCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

mRNA sequence

ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

Coding sequence (CDS)

ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

Protein sequence

MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVFTTKPCTLVVYLECHVKFLNHEFVQDRNLKPTQSKTDKERGAVVVKGTKPEQNEKLRENTGKERRHKLDPIHPGERTDNLPLKNSTMDPTFSFIAAQTLDAVIKSLSLSLSQSQPVCSSIIFSLSA

Homology

[Close]

BLAST of CsGy2G023400.1 vs. NCBI nr
Match: KGN62963.1 (hypothetical protein Csa_2G381880 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVF 56
           MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWE+ + D   F
Sbjct: 154 MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALFF 208

[Close]

BLAST of CsGy2G023400.1 vs. TrEMBL
Match: tr|A0A0A0LME2|A0A0A0LME2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVF 56
           MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWE+ + D   F
Sbjct: 154 MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALFF 208

The following BLAST results are available for this feature:

BLAST of CsGy2G023400.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62963.1	2.7e-18	87.27	hypothetical protein Csa_2G381880 [Cucumis sativus]	[more]

BLAST of CsGy2G023400.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G023400.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G023400.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LME2\|A0A0A0LME2_CUCSA	1.8e-18	87.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G023400	CsGy2G023400	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G023400.1	CsGy2G023400.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023400.1.CDS.4	CsGy2G023400.1.CDS.4	CDS
CsGy2G023400.1.CDS.3	CsGy2G023400.1.CDS.3	CDS
CsGy2G023400.1.CDS.2	CsGy2G023400.1.CDS.2	CDS
CsGy2G023400.1.CDS.1	CsGy2G023400.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G023400.1.exon.4	CsGy2G023400.1.exon.4	exon
CsGy2G023400.1.exon.3	CsGy2G023400.1.exon.3	exon
CsGy2G023400.1.exon.2	CsGy2G023400.1.exon.2	exon
CsGy2G023400.1.exon.1	CsGy2G023400.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..130