CsGy2G012580.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G012580.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionzinc finger CCHC domain-containing protein 10
LocationChr2 : 12457704 .. 12459640 (+)
Sequence length1399
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAAAGAAAAATCATAGTGACCCGACCCGACCGAATTCGGGTTCTTATAAAAGCCCCGTCTACTGTCCGTCCTCCATATTTCTCATTCCATTCGAGATTTTGTACGAACTGGATTTTGCTAAATCTTCAAACCCTAAGGAAGGTATGTACCCACTACGATTTCTCTACTTTCGATGGATTTTCAAGCTTTGATAGCTCCAAACATTGCCTAATTACACTCGATCTTTCGGATTTTACCTTTTTCCTTACGAACCAGATCGGTGTTCTACTCCAGTTACGATTTGTTAATAAGAAACATTAGATTTTTGTTGTGATTATGTTGTTTTAAGCTATACTTTTCTCTGATTTTATTCTAATTCCCTCCCTCCTACTGTAACTATTGGAAACCCTAAATTAATTGTTCTTTGCTCTTTTCTTGGTTTTTTTTGTGTTCTTTACTTTTTGTACGATTTATCTGCTCGTAATCTAGGGATTTTTTCTTATGGTCTTATTCTTCCAATTTATCTTCCACCCGGGTATTTATTTATATTTAGATTTGGAAGTCTTAGAATGATTTGTAAGAAGGAAACCTGATACTTCTTGTTTCGTTTTTCTCGTTATGTCTGTTTGCTCTTAATTTTGGTAATTCATCGCGATCCTATTCTAAAGTTTCTGATTGCTCGTCGTGTGTTTGGATTCAGATATTGAAAAAACAAACCATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCTGCCGCTCTTAGTGCTGCAAAAGGTCTTAGTCGTGCCCAGGCCGAACGTGCTGCTGCGGCTGCTGCTCGGAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTAGGTGAAAGAAAAGACATTAAGGGCTCTATGTCTGGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGATGGGACACTGGACCTACGAATGCAAAAACGAACGAGTTTACATATCTCGTCCATCTCGAACTCAACAACTAAAAAATCCAAAGCTGAGGATGAAGATGGAAGTCTCATTGGAGTTGGACAACCCAGATCCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAATGCAAAATCCAATAGCGACAGTGAGGCCTCTGTGTTTGAGACTGTTAGTGGGTCCTCCTCAGTTACTGAATCTGACGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCCGAATCAGAGAGTGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGATTCTTCTGATTCAGACTCAAGGTCCGAATCAGAATCTGATTCTGATAATGAACGTAGTAGGAGGAAGAGCCGACGACACAGCAGAAAACGCTAGTTAAGGGGGATCGAGTGAAGCGGATTAGAATTGTCGATAAATCATGGCAATTGTAGTCAGTTTAGAGATTTGAGTTTCATTCAGTTTCTTGTTTGGGAAGATCTGAAGTTTGGGGTTTCATTTTTGATTTTAGCAACTACTTCCCTTCCTTTGTTCTCTTCTTAGCTCTTATGAATGTATAAATTGTTGTTTATGCTTTACTTTCTATAACTGTTATGTTTACATATGTTGGTTCTTGAATAAATTTTGGTTAATGTTTATTTGTCGATGTCGCACCCAATTTCAGGAGTGCAGTTCTAAAGATTGGTGTTGAAATGTGATTGTAATACATGAGAAAGATAGTTAGATTACAAACTGTTGGAAGAAAATGGAATAGGGATTTCAAATTGGACTTAGCCCTCAATTCAAATGTGGATTTATATGGGTATGGATTGAATTCATT

mRNA sequence

TTTTAAAGAAAAATCATAGTGACCCGACCCGACCGAATTCGGGTTCTTATAAAAGCCCCGTCTACTGTCCGTCCTCCATATTTCTCATTCCATTCGAGATTTTGTACGAACTGGATTTTGCTAAATCTTCAAACCCTAAGGAAGATATTGAAAAAACAAACCATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCTGCCGCTCTTAGTGCTGCAAAAGGTCTTAGTCGTGCCCAGGCCGAACGTGCTGCTGCGGCTGCTGCTCGGAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTAGGTGAAAGAAAAGACATTAAGGGCTCTATGTCTGGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGATGGGACACTGGACCTACGAATGCAAAAACGAACGAGTTTACATATCTCGTCCATCTCGAACTCAACAACTAAAAAATCCAAAGCTGAGGATGAAGATGGAAGTCTCATTGGAGTTGGACAACCCAGATCCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAATGCAAAATCCAATAGCGACAGTGAGGCCTCTGTGTTTGAGACTGTTAGTGGGTCCTCCTCAGTTACTGAATCTGACGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCCGAATCAGAGAGTGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGATTCTTCTGATTCAGACTCAAGGTCCGAATCAGAATCTGATTCTGATAATGAACGTAGTAGGAGGAAGAGCCGACGACACAGCAGAAAACGCTAGTTAAGGGGGATCGAGTGAAGCGGATTAGAATTGTCGATAAATCATGGCAATTGTAGTCAGTTTAGAGATTTGAGTTTCATTCAGTTTCTTGTTTGGGAAGATCTGAAGTTTGGGGTTTCATTTTTGATTTTAGCAACTACTTCCCTTCCTTTGTTCTCTTCTTAGCTCTTATGAATGTATAAATTGTTGTTTATGCTTTACTTTCTATAACTGTTATGTTTACATATGTTGGTTCTTGAATAAATTTTGGTTAATGTTTATTTGTCGATGTCGCACCCAATTTCAGGAGTGCAGTTCTAAAGATTGGTGTTGAAATGTGATTGTAATACATGAGAAAGATAGTTAGATTACAAACTGTTGGAAGAAAATGGAATAGGGATTTCAAATTGGACTTAGCCCTCAATTCAAATGTGGATTTATATGGGTATGGATTGAATTCATT

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCTGCTGCTGAAAGGATTAAGGCTGCCGCTCTTAGTGCTGCAAAAGGTCTTAGTCGTGCCCAGGCCGAACGTGCTGCTGCGGCTGCTGCTCGGAATGTTAATGCTTATGGGCAGAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGGGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTAGGTGAAAGAAAAGACATTAAGGGCTCTATGTCTGGTGCTGGTGGAGCTGCTGCACAATGCCAGAAATGTTATCAGATGGGACACTGGACCTACGAATGCAAAAACGAACGAGTTTACATATCTCGTCCATCTCGAACTCAACAACTAAAAAATCCAAAGCTGAGGATGAAGATGGAAGTCTCATTGGAGTTGGACAACCCAGATCCTGGTGAGGAGAAGAAGCCCAAGAAGCATTCGAAGAAGAAAAGTAAAAGAAAGCATCGGTCCAATGCAAAATCCAATAGCGACAGTGAGGCCTCTGTGTTTGAGACTGTTAGTGGGTCCTCCTCAGTTACTGAATCTGACGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCCGAATCAGAGAGTGAAAGGAGTCGAAGAAGGAGAAAGAAGCAGAAGAGGGGGAGAAGAAAGAGGAGGTACAGTTCATCTTCTGATTCTTCTGATTCAGACTCAAGGTCCGAATCAGAATCTGATTCTGATAATGAACGTAGTAGGAGGAAGAGCCGACGACACAGCAGAAAACGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRPSRTQQLKNPKLRMKMEVSLELDNPDPGEEKKPKKHSKKKSKRKHRSNAKSNSDSEASVFETVSGSSSVTESDDSSEESSSDYSSSSESESERSRRRRKKQKRGRRKRRYSSSSDSSDSDSRSESESDSDNERSRRKSRRHSRKR
Homology
[Close]
BLAST of CsGy2G012580.1 vs. NCBI nr
Match: XP_011649249.1 (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN61833.1 hypothetical protein Csa_2G249870 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 6.7e-58
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. NCBI nr
Match: XP_008460989.1 (PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_008460988.2 PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 3.3e-57
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKGSMS AGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. NCBI nr
Match: XP_022138805.1 (zinc finger CCHC domain-containing protein 10 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 8.2e-56
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K SMS AGGAAAQCQKCYQ+GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASMSSAGGAAAQCQKCYQVGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. NCBI nr
Match: XP_022959515.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-55
Identity = 121/131 (92.37%), Postives = 121/131 (92.37%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQA       ARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMS AGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. NCBI nr
Match: XP_023006369.1 (zinc finger CCHC domain-containing protein 10 [Cucurbita maxima] >XP_023006370.1 zinc finger CCHC domain-containing protein 10 [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-55
Identity = 121/131 (92.37%), Postives = 121/131 (92.37%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQA       ARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMS AGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. TAIR10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 192.6 bits (488), Expect = 3.1e-49
Identity = 105/134 (78.36%), Postives = 111/134 (82.84%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QA       ARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAG---GAAAQCQKCYQMGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD   S S  G    AA+QCQKC+Q GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKL 132
           SRPSRTQQLKNPKL
Sbjct: 121 SRPSRTQQLKNPKL 134

[Close]
BLAST of CsGy2G012580.1 vs. Swiss-Prot
Match: sp|Q9CX48|ZCH10_MOUSE (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 96  QCQKCYQMGHWTYECKNERVYISRPSRTQQLK 128
           +CQKC + GHWTYECK +R Y+ RPSRT +LK
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELK 53

[Close]
BLAST of CsGy2G012580.1 vs. Swiss-Prot
Match: sp|Q5EB97|ZCH10_RAT (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-07
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 96  QCQKCYQMGHWTYECKNERVYISRPSRTQQLK 128
           +CQKC + GHWTYECK +R Y+ RPSRT +LK
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELK 53

[Close]
BLAST of CsGy2G012580.1 vs. Swiss-Prot
Match: sp|Q8TBK6|ZCH10_HUMAN (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-06
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0 

Query: 87  MSGAGGAAAQCQKCYQMGHWTYECKNERVYISRPSRTQQLK 128
           +S A     +CQKC + GHWTYEC  +R Y+ RPSRT +LK
Sbjct: 35  ISEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELK 75

[Close]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match: tr|A0A0A0LJ33|A0A0A0LJ33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match: tr|A0A1S3CDQ2|A0A1S3CDQ2_CUCME (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.2e-57
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKGSMS AGGAAAQCQKCYQMGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match: tr|A0A2H3Z5Z3|A0A2H3Z5Z3_PHODC (zinc finger CCHC domain-containing protein 10 OS=Phoenix dactylifera OX=42345 GN=LOC103720632 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 121/131 (92.37%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEK+QAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQE++
Sbjct: 1   MSSKKEEKAQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQERK 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K S+S AGGAAAQCQKC+Q GHWTYECKNERVY+SRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKASVSSAGGAAAQCQKCFQSGHWTYECKNERVYMSRP 120

Query: 121 SRTQQLKNPKL 132
           SRTQQLKNPKL
Sbjct: 121 SRTQQLKNPKL 131

[Close]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match: tr|A0A2P5FCI6|A0A2P5FCI6_9ROSA (Zinc finger, CCHC-type OS=Trema orientalis OX=63057 GN=TorRG33x02_086630 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.3e-53
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAA+RIKAAALSAAKGLSRAQA       ARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAADRIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K +MS  GGAA+QCQKC+Q GHWTYECKNERVYI+RP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKANMSAVGGAASQCQKCFQPGHWTYECKNERVYIARP 120

Query: 121 SRTQQLKNPK 131
           SRTQQLKNPK
Sbjct: 121 SRTQQLKNPK 130

[Close]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match: tr|A0A2P5C413|A0A2P5C413_PARAD (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_186660 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.3e-53
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAXXXXXXXARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAA+RIKAAALSAAKGLSRAQA       ARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAADRIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKD+K +MS  GGAA+QCQKC+Q GHWTYECKNERVYI+RP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDLKANMSAVGGAASQCQKCFQPGHWTYECKNERVYIARP 120

Query: 121 SRTQQLKNPK 131
           SRTQQLKNPK
Sbjct: 121 SRTQQLKNPK 130

The following BLAST results are available for this feature:
BLAST of CsGy2G012580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649249.16.7e-58100.00PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis sativus] >KGN6... [more]
XP_008460989.13.3e-5799.24PREDICTED: zinc finger CCHC domain-containing protein 10 [Cucumis melo] >XP_0084... [more]
XP_022138805.18.2e-5696.95zinc finger CCHC domain-containing protein 10 [Momordica charantia][more]
XP_022959515.11.8e-5592.37zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata][more]
XP_023006369.11.8e-5592.37zinc finger CCHC domain-containing protein 10 [Cucurbita maxima] >XP_023006370.1... [more]
BLAST of CsGy2G012580.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G49400.13.1e-4978.36zinc knuckle (CCHC-type) family protein[more]
BLAST of CsGy2G012580.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9CX48|ZCH10_MOUSE8.2e-0765.63Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1... [more]
sp|Q5EB97|ZCH10_RAT8.2e-0765.63Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z... [more]
sp|Q8TBK6|ZCH10_HUMAN4.1e-0653.66Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10... [more]
BLAST of CsGy2G012580.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJ33|A0A0A0LJ33_CUCSA4.4e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1[more]
tr|A0A1S3CDQ2|A0A1S3CDQ2_CUCME2.2e-5799.24zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A2H3Z5Z3|A0A2H3Z5Z3_PHODC1.9e-5392.37zinc finger CCHC domain-containing protein 10 OS=Phoenix dactylifera OX=42345 GN... [more]
tr|A0A2P5FCI6|A0A2P5FCI6_9ROSA7.3e-5386.92Zinc finger, CCHC-type OS=Trema orientalis OX=63057 GN=TorRG33x02_086630 PE=4 SV... [more]
tr|A0A2P5C413|A0A2P5C413_PARAD7.3e-5386.92Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_186660 PE=... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G012580CsGy2G012580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012580.1.exon.1CsGy2G012580.1.exon.1exon
CsGy2G012580.1.exon.2CsGy2G012580.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012580.1.five_prime_UTR.1CsGy2G012580.1.five_prime_UTR.1five_prime_UTR
CsGy2G012580.1.five_prime_UTR.2CsGy2G012580.1.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012580.1.CDS.1CsGy2G012580.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G012580.1.three_prime_UTR.1CsGy2G012580.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G012580.1CsGy2G012580.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13917zf-CCHC_3coord: 93..129
e-value: 2.0E-20
score: 72.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..152
NoneNo IPR availablePANTHERPTHR13491ZCCHC10 PROTEINcoord: 46..223
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 80..113