CsGy2G007220.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G007220.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 5752391 .. 5752878 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGTCAATCCCGAACATGATGCATCTATATGTCAATGTGAGTAGGATGGGTTTGGCTATAAACCTGAATTCTAAATCATTTGGTCAGTTTGAAGACCAAACTCAGGTTATTGACTCTGACTCTGAACCAGCTGCATTGACAGTATACGACGATGAAGAAATGATGGCTAATAATGAATATAGGAACTTTCGAACAAAAACGGACGATGAATTTGACTTTGACGATCGTGAACATGAATTACCATCAAAGATATTCACGTAGATAGATATGAATGTAATAGATAGTATTTGTGAGTACATCCCAACTGTAGACCTTGTGGTTGCAGGGTTGTTGACAATTCCGAACTGTACAAGGGAATGATATGTCAAGATAAAGAAACACTTCAACATATGGTAAAATGTTTTACCATTAACAATCACGCACCATATGAGGTAGTGGAATCAACAATTCGATGTAAGATGTGGCAAAAGGTTACACGTTGA

mRNA sequence

ATGGCAATGTCAATCCCGAACATGATGCATCTATATGTCAATGTGAGTAGGATGGGTTTGGCTATAAACCTGAATTCTAAATCATTTGGTCAGTTTGAAGACCAAACTCAGGTTATTGACTCTGACTCTGAACCAGCTGCATTGACAGTATACGACGATGAAGAAATGATGGCTAATAATGAATATAGGAACTTTCGAACAAAAACGGACGATGAATTTGACTTTGACGATCGTGAACATGAATTACCATCAAAGATATTCACGGTTGTTGACAATTCCGAACTGTACAAGGGAATGATATGTCAAGATAAAGAAACACTTCAACATATGGTAAAATGTTTTACCATTAACAATCACGCACCATATGAGGTAGTGGAATCAACAATTCGATGTAAGATGTGGCAAAAGGTTACACGTTGA

Coding sequence (CDS)

ATGGCAATGTCAATCCCGAACATGATGCATCTATATGTCAATGTGAGTAGGATGGGTTTGGCTATAAACCTGAATTCTAAATCATTTGGTCAGTTTGAAGACCAAACTCAGGTTATTGACTCTGACTCTGAACCAGCTGCATTGACAGTATACGACGATGAAGAAATGATGGCTAATAATGAATATAGGAACTTTCGAACAAAAACGGACGATGAATTTGACTTTGACGATCGTGAACATGAATTACCATCAAAGATATTCACGGTTGTTGACAATTCCGAACTGTACAAGGGAATGATATGTCAAGATAAAGAAACACTTCAACATATGGTAAAATGTTTTACCATTAACAATCACGCACCATATGAGGTAGTGGAATCAACAATTCGATGTAAGATGTGGCAAAAGGTTACACGTTGA

Protein sequence

MAMSIPNMMHLYVNVSRMGLAINLNSKSFGQFEDQTQVIDSDSEPAALTVYDDEEMMANNEYRNFRTKTDDEFDFDDREHELPSKIFTVVDNSELYKGMICQDKETLQHMVKCFTINNHAPYEVVESTIRCKMWQKVTR

Homology

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BLAST of CsGy2G007220.1 vs. NCBI nr
Match: XP_008456454.1 (PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 70/147 (47.62%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 18  MGLAINLNSKSFGQFEDQTQVIDSDSEPAALTVYDDEEMMANNEYRNFRTKTDDEF---D 77
           + L INLN +         + +D D E  A  V  +EEM+A NEY  FRTKTDDEF   D
Sbjct: 2   VNLTINLNVEP----RYVEEYVDVDPESDAPPVCHEEEMVATNEYTEFRTKTDDEFEEMD 61

Query: 78  FDDREHELPSKIFT--------------------VVDNSELYKGMICQDKETLQHMVKCF 137
           FD  E+E+PS  FT                    V+DN++LY GMIC++KE LQHMVKCF
Sbjct: 62  FDGCEYEVPSNTFTNLDMDAVDDIQEHDPIIVPMVIDNTKLYMGMICENKEMLQHMVKCF 121

[Close]

BLAST of CsGy2G007220.1 vs. NCBI nr
Match: XP_022143566.1 (uncharacterized protein LOC111013435 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = 0


Query: 1   MAMSIPNMMHLYVNVSRMGLAINLNSKSFGQFEDQTQVIDSDSE---PAALTVYDDEEMM 60
           +A+S P ++ L+VNV  M + ++L+ +   Q  + +Q +D + E   P    + +D +++
Sbjct: 67  IALSCPQLVELHVNVRNM-INVSLDHEEPSQCLEHSQCLDLEPELVVPPVTHLDEDMDLI 126

Query: 61  ANNEYRNFRTKTDDEFDFDD--REHELPSKIFTVV--------------------DNSEL 120
           A++ +   RT TDDEFD  D   EH++PS  F  +                    +N  L
Sbjct: 127 ADDRFIELRTITDDEFDELDLEGEHDIPSPTFNDIANDMVNCNAEHDSIIQPLPAENDML 186

Query: 121 YKGMICQDKETLQHMVKCFTINNHAPYEVVES-----TIRCKMWQ 136
           YK  +C DKET+QH+VKCF + +H PY++VES      IRCK WQ
Sbjct: 187 YKRFMCNDKETMQHIVKCFALRSHHPYKLVESAPSKWVIRCKKWQ 230

[Close]

BLAST of CsGy2G007220.1 vs. NCBI nr
Match: XP_022156564.1 (uncharacterized protein LOC111023439 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 0


Query: 1   MAMSIPNMMHLYVNVSRMGLAINLNSKSFGQFEDQTQVIDSDSE---PAALTVYDDEEMM 60
           +A+  P +  L+VNV  M + ++LN +   +  D +Q +  + E   P    + +D ++ 
Sbjct: 40  IALPCPQLAELFVNVRNM-MNVSLNLEVPSKCLDHSQCLVPELELVVPPMTNLDEDMDLT 99

Query: 61  ANNEYRNFRTKTDDEFDFDD--REHELPSKIF----------------TVVDNSELYKGM 120
           A+N + + +T  DDEFD  D   EH++ S+ F                    N  LYKG 
Sbjct: 100 ADNRFIDLKTTIDDEFDELDLEGEHDIYSQTFNDMVNNIAEHDSIFQPVAAKNEMLYKGF 159

Query: 121 ICQDKETLQHMVKCFTINNHAPYEVVES-----TIRCKMWQ 136
            C DKET+QH+VK F +NNH  YEV+ES      IRCK WQ
Sbjct: 160 RCSDKETMQHIVKHFVVNNHHTYEVIESVPSKWVIRCKKWQ 199

[Close]

BLAST of CsGy2G007220.1 vs. NCBI nr
Match: XP_022143642.1 (uncharacterized protein LOC111013502 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 90  VDNSELYKGMICQDKETLQHMVKCFTINNHAPYEVVEST-----IRCKMWQ 136
           V+N  LYKG +C DK T+QH+VK F + +H PYEVVEST     +RCK WQ
Sbjct: 7   VENDMLYKGFMCNDKRTMQHIVKRFAVKSHHPYEVVESTPSIWAVRCKKWQ 57

[Close]

BLAST of CsGy2G007220.1 vs. NCBI nr
Match: XP_022151714.1 (uncharacterized protein LOC111019626 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 90  VDNSELYKGMICQDKETLQHMVKCFTINNHAPYEVVEST-----IRCKMWQ 136
           V+N  LYKG +C DK+T+QH+VK F + +H PY+VVE T     +RCK WQ
Sbjct: 3   VENDMLYKGFMCNDKKTMQHIVKRFAVKSHHPYKVVELTPSIWAVRCKKWQ 53

[Close]

BLAST of CsGy2G007220.1 vs. TrEMBL
Match: tr|A0A1S3C4J7|A0A1S3C4J7_CUCME (uncharacterized protein LOC103496397 OS=Cucumis melo OX=3656 GN=LOC103496397 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 70/147 (47.62%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 18  MGLAINLNSKSFGQFEDQTQVIDSDSEPAALTVYDDEEMMANNEYRNFRTKTDDEF---D 77
           + L INLN +         + +D D E  A  V  +EEM+A NEY  FRTKTDDEF   D
Sbjct: 2   VNLTINLNVEP----RYVEEYVDVDPESDAPPVCHEEEMVATNEYTEFRTKTDDEFEEMD 61

Query: 78  FDDREHELPSKIFT--------------------VVDNSELYKGMICQDKETLQHMVKCF 137
           FD  E+E+PS  FT                    V+DN++LY GMIC++KE LQHMVKCF
Sbjct: 62  FDGCEYEVPSNTFTNLDMDAVDDIQEHDPIIVPMVIDNTKLYMGMICENKEMLQHMVKCF 121

[Close]

BLAST of CsGy2G007220.1 vs. TrEMBL
Match: tr|E5GCF3|E5GCF3_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.3e-04
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1   MAMSIPNMMHLYVNVSRMGLAINLNSKSFGQFEDQTQVIDSDSEPAALTVYDDEEMMANN 60
           +A+  PNM+HLYV VS +  AINLN +     +   + +D D +  A  V  +EEM+A N
Sbjct: 49  IALPFPNMVHLYVTVSMIDSAINLNVEP----KYVEEYVDVDPKSDAPPVCHEEEMVATN 108

Query: 61  EYRNFRTKTDDE 73
           EY  FRT+TDD+
Sbjct: 109 EYTEFRTETDDD 116

The following BLAST results are available for this feature:

BLAST of CsGy2G007220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456454.1	2.0e-21	47.62	PREDICTED: uncharacterized protein LOC103496397 [Cucumis melo]	[more]
XP_022143566.1	4.8e-15	34.55	uncharacterized protein LOC111013435 [Momordica charantia]	[more]
XP_022156564.1	1.0e-12	34.78	uncharacterized protein LOC111023439 [Momordica charantia]	[more]
XP_022143642.1	9.8e-08	56.86	uncharacterized protein LOC111013502 [Momordica charantia]	[more]
XP_022151714.1	1.1e-06	52.94	uncharacterized protein LOC111019626 [Momordica charantia]	[more]

BLAST of CsGy2G007220.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G007220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G007220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4J7\|A0A1S3C4J7_CUCME	1.3e-21	47.62	uncharacterized protein LOC103496397 OS=Cucumis melo OX=3656 GN=LOC103496397 PE=...	[more]
tr\|E5GCF3\|E5GCF3_CUCME	4.3e-04	44.44	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G007220	CsGy2G007220	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G007220.1.CDS.2	CsGy2G007220.1.CDS.2	CDS
CsGy2G007220.1.CDS.1	CsGy2G007220.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G007220.1.exon.2	CsGy2G007220.1.exon.2	exon
CsGy2G007220.1.exon.1	CsGy2G007220.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G007220.1	CsGy2G007220.1-protein	polypeptide