CsGy2G006900.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G006900.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 5483850 .. 5484083 (+)
Sequence length	234

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

mRNA sequence

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

Coding sequence (CDS)

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

Protein sequence

METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVVNGEYEYSPNFPSKCIND

Homology

[Close]

BLAST of CsGy2G006900.1 vs. NCBI nr
Match: KGN61211.1 (hypothetical protein Csa_2G070280 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60
          METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV
Sbjct: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60

Query: 61 NGEYEYSPNFPSKCIND 78
          NGEYEYSPNFPSKCIND
Sbjct: 61 NGEYEYSPNFPSKCIND 77

[Close]

BLAST of CsGy2G006900.1 vs. TrEMBL
Match: tr|A0A0A0LMK2|A0A0A0LMK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070280 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60
          METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV
Sbjct: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60

Query: 61 NGEYEYSPNFPSKCIND 78
          NGEYEYSPNFPSKCIND
Sbjct: 61 NGEYEYSPNFPSKCIND 77

The following BLAST results are available for this feature:

BLAST of CsGy2G006900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61211.1	2.3e-38	100.00	hypothetical protein Csa_2G070280 [Cucumis sativus]	[more]

BLAST of CsGy2G006900.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G006900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G006900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMK2\|A0A0A0LMK2_CUCSA	1.5e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G006900	CsGy2G006900	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G006900.1.exon.1	CsGy2G006900.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G006900.1.CDS.1	CsGy2G006900.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G006900.1	CsGy2G006900.1-protein	polypeptide