CsGy2G006900 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G006900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 5483850 .. 5484083 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

mRNA sequence

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

Coding sequence (CDS)

ATGGAAACCGATTGGGTTTGCGGTTTGTTTGTGGGAATCGAACTTATTTCCGGTGGATTATGGAGTTGTGGTTGCAAATTTATAGGAACTATTGATGAAGGTTTGAAGGATTTGAAAGAAATTAAGAAAGAAAGAGCTGAGTATAATCCATCCAAGAACAGCTTCAGCAAAATTGTAGTCAACGGTGAGTACGAATATTCCCCAAATTTTCCCTCAAAATGTATAAATGATTAG

Protein sequence

METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVVNGEYEYSPNFPSKCIND

Homology

[Close]

BLAST of CsGy2G006900 vs. NCBI nr
Match: KGN61211.1 (hypothetical protein Csa_2G070280 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 2.3e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60
          METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV
Sbjct: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60

Query: 61 NGEYEYSPNFPSKCIND 78
          NGEYEYSPNFPSKCIND
Sbjct: 61 NGEYEYSPNFPSKCIND 77

[Close]

BLAST of CsGy2G006900 vs. TrEMBL
Match: tr|A0A0A0LMK2|A0A0A0LMK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070280 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60
          METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV
Sbjct: 1  METDWVCGLFVGIELISGGLWSCGCKFIGTIDEGLKDLKEIKKERAEYNPSKNSFSKIVV 60

Query: 61 NGEYEYSPNFPSKCIND 78
          NGEYEYSPNFPSKCIND
Sbjct: 61 NGEYEYSPNFPSKCIND 77

The following BLAST results are available for this feature:

BLAST of CsGy2G006900 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61211.1	2.3e-38	100.00	hypothetical protein Csa_2G070280 [Cucumis sativus]	[more]

BLAST of CsGy2G006900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G006900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G006900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMK2\|A0A0A0LMK2_CUCSA	1.5e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G006900.1	CsGy2G006900.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G006900	Csa2G070280	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G006900	CSPI02G06740	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G006900	CsaV3_2G009150	Cucumber (Chinese Long) v3	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G006900	Cucurbita maxima (Rimu)	cgybcmaB169
CsGy2G006900	Cucurbita maxima (Rimu)	cgybcmaB252
CsGy2G006900	Cucurbita moschata (Rifu)	cgybcmoB161
CsGy2G006900	Cucurbita moschata (Rifu)	cgybcmoB240
CsGy2G006900	Cucurbita pepo (Zucchini)	cgybcpeB163
CsGy2G006900	Cucurbita pepo (Zucchini)	cgybcpeB261
CsGy2G006900	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G006900	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G006900	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G006900	Watermelon (Charleston Gray)	cgybwcgB102
CsGy2G006900	Watermelon (97103) v1	cgybwmB155
CsGy2G006900	Silver-seed gourd	carcgybB0004
CsGy2G006900	Silver-seed gourd	carcgybB0179
CsGy2G006900	Watermelon (97103) v2	cgybwmbB104
CsGy2G006900	Wax gourd	cgybwgoB128
CsGy2G006900	Wax gourd	cgybwgoB132