CsGy2G006260.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G006260.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionZf-CCHC domain-containing protein/RVP_2 domain-containing protein
LocationChr2 : 4589226 .. 4592795 (+)
Sequence length390
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGTTATAGTGGCATCTAAGAGCGACAAATGTAGAAGATTTGAGAGGGGTTTACGACAGAAGATCGAAAATAGAAAAATGGACTAACTTTTCCAATTGGTAGAGACAACTTTGAGAGTAGAGTAGAGCAGAGCATAGAGGGACCAAGGCTAGTGGTGGATCTTAGTAGAGGAGTTCCTTTGGCAAGCAGCTTTAGAGGCACACCTGGTGTATCAGGTAAACGAGATTTCAAGGGCCATTCTGGTGGCCCACCCTCGAGGCAGTGTAGTTCAAGGAGTTCCTCCCAAAGGCCGAGTCAAAGGATTTCAAGTCAGCCACCAAGACAACGTAGTCTATCACGCACTATTATGCACGCATCCTTAAACTTACAATGCGACACGCAATGCGACTTGAGCAACTCTGACATCTCTAATGCAAAATGCGAGAATGCTCTACTTAAGTACTTGAATTTATCAATTAGACTTAAAACTATTATGCAATAGAGATAACATAACATAGCCAATGGGAAATAACAACACTTCTCTTTATTAACTTTAAACCTTGCATTCCAATATTACACTTTACAAGTTTCCTTAATACATGAATTAAGCAATTAACCTTAACGCCTTACTTAGCTCCCATAAAATTGAGATGCATCCCTTTTAGTAAAAGACCTTTATATACATAATAATTTCCTATTTACAAAAATTACAAAATAAAAGAACTTAGATCACATGCTCAGCTTCCACGTATAGCAACCCATTGTATCCTTCCTTACTCGGCCTTATTTTCTGATTACCTAGAAAGAAAAAACTTAAATCGTAAGTCAAAGACTTAGTGAGTGATACTTCCAAAAAACTTTTTTGGACATACAAAGCATTCAAATCATTTAATCAAATAGGCTTTAATGCCTCATTTTCAGTAGAATGTAAATACACATTAGCCTTTCATATTTCTTTCACCAAGAACATGAATCATTTCCACGCGTAGACTATTGTGATGTCTTTTTCATTCAACATCCTTTAGAGAATTTCTCAATTCATTTTCCTATTGCTCAGACCGCAAAGCTCCGCATTGGCTAGCTTCACCTCCACCACAAATTCCTTTTCTACGTGGCTATTTATACTCCTTATGTGCATATAATAGTTAGTTCATTAATAGGAATAAGACTAATGGTTTACAAAACAACATACCATTCAATAAAATCATCAAACGTAAGACAAGCTTACTTTTAAACTCAATCTTTTATAACATTCACGTATAAAATATCATTACAAATGAGGAGTTTAGAAAGAAGCTTTGAAAAACATTTAAACGTTTTGGAAATTCACTCATAAATCCAAAGTTTCCTTTTAGCCCCCAACGCCTTGTCTTCAAGCTCCTTCTTGCCTAATCTCTTCTTTTTTCAACAGAATAACACTAACGATTTTTGCATAATAATCATTTTACCGTCCCTTTTCCTATATTTATACTAATCTAAAAAATAGATTAGTCATCCTTAAGTCCTTATTAACTTGCCAACTCCTATTTGAAAATTTACACGTGTAAGCTCTATGTTTATCTTGGGCATGCTTAACTTAAATTCTTACATGTGCTCATTAAATATACTTAGAAAAATTTCCAAAAAAATCCTAATTTCTTTATTAGTCAACTTGTCTCGTAATGTAATGAACTCTAGAACGCCTAATGCATACTTGCTCACCTTTTCTTCTCGTCGCCTAAACTTATTGTCAAGCCTCAAACGCATCTTCCTTCCTCACATCGCCTAGCCTTTCATGACTCAACAAAAACATTTAGCTTCTCAAGCATTTGTTTTTCAAAGCCTTCTTAAAAAATTCATACTAAAATACTTATTTTGAAAATTGACCCTTCTGTCCAGGTACGAGTCTTACACAGTGTCTCAAGCAGGGCGAGAGTTTGTGGCTAACGTAGCAAAATCACGGATAAACATACCTTTGTGTCGATGTGAGTAAGTTTCAAATTCGAATTGCCTCTGTTTGATAAGAGCGATCCTCCAAATTCGTATCACCAAAACGATGTGAAATCACTAGCGTTCTCTGGCAGCATCCATACACGAACTGGGAATTCGACTCATCGAATTCAAGTCCGCTAGAACCACTAAGAATGGGAATTTTGACTCTCCTCGAATTCTCTTTCTATGTCAAACGAAATTTATTTTCTCGGATGTATAAAATAAAACGCCTAAGGCCTTATTTATAAGTTCCTTAGGGTTTTCTAATAACAACTCAAGGATTTCTAATAACTTACGGTTTCCTAATAAGCTTCCAATTACTTATTAATTACCTAGTTCAAAGATAAATTTGACTCAGTTCTTTTGTGTGTGACCCGTTAGGGTAATTTAATATGGAAATGAGCTCATAACTCGCATGGGTCTCTGGCAAGACATTATAACTACCCATATTAAATTAAGTCGGTGATCCAACATAACCTAATATAGTTATTGCTTTCATCTTTTTATCATGCGATATCCATAATTGAATATAAGGCATGGACAAAGTCACCTTATCTAATTCAATTTCTTTTTCGATCAATAAGAATATTAAAATAATAAATGACATTAATACCCTTATTAATTCATTTTTAGACGACCATGCATTTTCACAGTCACACTTAATCAAGGGGTCCAAAGATATCTCTCCGTAACAAGAGAGATAAATTCCATCTTGATTAATCATTGTCAACTACGTAATTCATAGTGTATTCGAGTACAACCTTTATAATTATCTAGTTAAAGATAATGTTTGATTGCATTAAAATAGATTAATTCCTAGGTTTGACACAATGATAACCTTAGGTCTAAGAATAAAAACAATCAATCATTTAAGATTATTTATGACACATGTCCATGTAATAATCTCAAAAAAGGGATCGATCTAATTCTTAATCTCTAATAAGAAAATATGATTATAATTTATGTCTTTACATATATAATCATCCAATGATTATCAATTAAAACTCATACTGATCTTAATTTATTATTGTTCCCACAATAATAATCAATTAGGGACATTTAGAATATAATAACATATTCATGGATATTATTATACAATAACATACAATTGAATAATAATGAGAACAATACATTTTATTAAATAATTAAGCAATAAATCAATTATCCATAAAATACTTATAGAGCACAATAAAAAAAAAACCAACAAGATCGACATTATGACTCAGCATGAGGGGGAGGATGTACCAAACATCATTACTAGTACAGTTCTTATTTGTAATACTCACGCTTATGTTTTATTAGACCCAAGTGCTACACATTCTTTTGTGTCTTGCTATTTTATAAGTGAGTAAGAGGGTAGAGTCGTTAGCAGAGATGTTAGTTATTTATAACCCTATTGGTAACAAAATGCTAGTTAGCAAGGTACTGCGAGGTTGTGAAGTCCTAGTGGAAATTGTCAATTTACCAGTAGACCTTTTGCCACTTGTGTTACAAGAGCTAGATGTGATTCTTGGAATGGACTTCCTGTATACACATTTTGCTTTTATGAACTACCATAGGAAGGAAGTAGTTTTTAGAAAACCAATATTTCTAGAGGTTGTGTTCAGAGGCTAG

mRNA sequence

ATGTCGGCAGACAACTTTGAGAGTAGAGTAGAGCAGAGCATAGAGGGACCAAGGCTAGTGGTGGATCTTAGTAGAGGAGTTCCTTTGGCAAGCAGCTTTAGAGGCACACCTGGTGTATCAGTGAGTAAGAGGGTAGAGTCGTTAGCAGAGATGTTAGTTATTTATAACCCTATTGGTAACAAAATGCTAGTTAGCAAGGTACTGCGAGGTTGTGAAGTCCTAGTGGAAATTGTCAATTTACCAGTAGACCTTTTGCCACTTGTGTTACAAGAGCTAGATGTGATTCTTGGAATGGACTTCCTGTATACACATTTTGCTTTTATGAACTACCATAGGAAGGAAGTAGTTTTTAGAAAACCAATATTTCTAGAGGTTGTGTTCAGAGGCTAG

Coding sequence (CDS)

ATGTCGGCAGACAACTTTGAGAGTAGAGTAGAGCAGAGCATAGAGGGACCAAGGCTAGTGGTGGATCTTAGTAGAGGAGTTCCTTTGGCAAGCAGCTTTAGAGGCACACCTGGTGTATCAGTGAGTAAGAGGGTAGAGTCGTTAGCAGAGATGTTAGTTATTTATAACCCTATTGGTAACAAAATGCTAGTTAGCAAGGTACTGCGAGGTTGTGAAGTCCTAGTGGAAATTGTCAATTTACCAGTAGACCTTTTGCCACTTGTGTTACAAGAGCTAGATGTGATTCTTGGAATGGACTTCCTGTATACACATTTTGCTTTTATGAACTACCATAGGAAGGAAGTAGTTTTTAGAAAACCAATATTTCTAGAGGTTGTGTTCAGAGGCTAG

Protein sequence

MSADNFESRVEQSIEGPRLVVDLSRGVPLASSFRGTPGVSVSKRVESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHFAFMNYHRKEVVFRKPIFLEVVFRG
Homology
[Close]
BLAST of CsGy2G006260.1 vs. NCBI nr
Match: XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 41  VSKRVESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDF 100
           +++ +E L+E LVI  P+G+ +LVS+VLR CEV++E + + +D+LPL LQ LDVIL MDF
Sbjct: 415 LNRMLEPLSEELVICTPVGDVLLVSEVLRDCEVVMEGLCMLMDILPLELQALDVILRMDF 474

Query: 101 LYTHFAFMNYHRKEVVFRKPIFLEVVFRG 130
           L+TH+A MN HRKEV+FRKP   EVVFRG
Sbjct: 475 LFTHYASMNCHRKEVIFRKPSSTEVVFRG 503

[Close]
BLAST of CsGy2G006260.1 vs. NCBI nr
Match: XP_020524782.1 (uncharacterized protein LOC110007560 [Amborella trichopoda])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0 

Query: 52  LVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHFAFMNYH 111
           LV+  P+G  M    V R C++ ++  +LP+DL+PL +Q+ DVILGMD+L+TH A +NYH
Sbjct: 176 LVVCTPVGGSMETDIVYRRCKLTIDGCDLPMDLIPLDIQDFDVILGMDWLFTHHATVNYH 235

Query: 112 RKEVVFRKPIFLEVVFRG 130
            K V F+ P   E+ FRG
Sbjct: 236 EKWVTFKCPDQAEIHFRG 253

[Close]
BLAST of CsGy2G006260.1 vs. NCBI nr
Match: XP_022855167.1 (uncharacterized protein LOC111376436 [Olea europaea var. sylvestris])

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 46  ESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHF 105
           ESL   LV+  P+G+ +L  ++ + C + V    L  DL+PL + + DVILGMDFL  H 
Sbjct: 396 ESLDNELVVMTPVGDSLLADRIYKDCGIRVNYHELKADLIPLDIHDFDVILGMDFLSNHR 455

Query: 106 AFMNYHRKEVVFRKPIFLEVVFRG 130
           A ++  RKEVVFR P  LE+V  G
Sbjct: 456 ASIDCFRKEVVFRSPGELEIVLTG 479

[Close]
BLAST of CsGy2G006260.1 vs. NCBI nr
Match: XP_011625197.1 (uncharacterized protein LOC105421034 [Amborella trichopoda])

HSP 1 Score: 70.9 bits (172), Expect = 3.7e-09
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0 

Query: 52  LVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHFAFMNYH 111
           L +  P+ + M   +V R C + +++ +LPVDL+ L +Q+ DVIL MD+LYTH+A +N H
Sbjct: 209 LTVCTPVEDSMETDRVYRKCGITIDMCDLPVDLILLEIQDFDVILSMDWLYTHYATVNCH 268

Query: 112 RKEVVFRKPIFLEVVFRG 130
            K+V F++P   E+ F G
Sbjct: 269 EKKVTFKRPAQAELHFEG 286

[Close]
BLAST of CsGy2G006260.1 vs. NCBI nr
Match: XP_008465228.1 (PREDICTED: uncharacterized protein LOC103502884 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 41  VSKRVESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDF 100
           +++ +E L E L IY  +G+ +LV++VLR CEVLVE +++  DLLPL LQ LDVILGMDF
Sbjct: 128 LNRMIEPLFEGLSIYTLVGDILLVNEVLRNCEVLVEGLSMLADLLPLELQMLDVILGMDF 187

Query: 101 LYTHF 106
           L TH+
Sbjct: 188 LCTHY 192

[Close]
BLAST of CsGy2G006260.1 vs. TrEMBL
Match: tr|A0A1S4E0X6|A0A1S4E0X6_CUCME (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.8e-19
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 0 

Query: 41  VSKRVESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDF 100
           +++ +E L+E LVI  P+G+ +LVS+VLR CEV++E + + +D+LPL LQ LDVIL MDF
Sbjct: 415 LNRMLEPLSEELVICTPVGDVLLVSEVLRDCEVVMEGLCMLMDILPLELQALDVILRMDF 474

Query: 101 LYTHFAFMNYHRKEVVFRKPIFLEVVFRG 130
           L+TH+A MN HRKEV+FRKP   EVVFRG
Sbjct: 475 LFTHYASMNCHRKEVIFRKPSSTEVVFRG 503

[Close]
BLAST of CsGy2G006260.1 vs. TrEMBL
Match: tr|A0A1S3CNE9|A0A1S3CNE9_CUCME (uncharacterized protein LOC103502884 OS=Cucumis melo OX=3656 GN=LOC103502884 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 41  VSKRVESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDF 100
           +++ +E L E L IY  +G+ +LV++VLR CEVLVE +++  DLLPL LQ LDVILGMDF
Sbjct: 128 LNRMIEPLFEGLSIYTLVGDILLVNEVLRNCEVLVEGLSMLADLLPLELQMLDVILGMDF 187

Query: 101 LYTHF 106
           L TH+
Sbjct: 188 LCTHY 192

[Close]
BLAST of CsGy2G006260.1 vs. TrEMBL
Match: tr|A0A2P6RYR8|A0A2P6RYR8_ROSCH (Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0145931 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-08
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 57  PIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHFAFMNYHRKEVV 116
           P G  + +  V RGC+VL+E V+L VDL+PL L E DVILGM+FL TH A ++  RK VV
Sbjct: 444 PAGASLKIEWVFRGCDVLIEGVSLEVDLIPLDLVEFDVILGMEFLATHRANIDCFRKIVV 503

Query: 117 FRKPIFLEVVFRG 130
           FR P    + F+G
Sbjct: 504 FRSPGKPMITFQG 516

[Close]
BLAST of CsGy2G006260.1 vs. TrEMBL
Match: tr|A0A1R3KCL6|A0A1R3KCL6_9ROSI (Retroviral aspartyl protease OS=Corchorus olitorius OX=93759 GN=COLO4_09262 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.0e-08
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 45  VESLAEMLVIYNPIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTH 104
           VE L    VI +P G  + V++V + C +++E V+LP DL+ L     DVILGMD+L  +
Sbjct: 34  VEPLEFEFVIDSPAGGDVFVNQVCKSCIIVIEDVSLPADLVVLDTHGFDVILGMDWLDIY 93

Query: 105 FAFMNYHRKEVVFRKPIFLEVVFRG 130
           +AF++YHRK + FR P   E  F G
Sbjct: 94  YAFLDYHRKRIDFRIPGLEEFSFVG 118

[Close]
BLAST of CsGy2G006260.1 vs. TrEMBL
Match: tr|A0A2P6RHV2|A0A2P6RHV2_ROSCH (Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0084311 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 0 

Query: 57  PIGNKMLVSKVLRGCEVLVEIVNLPVDLLPLVLQELDVILGMDFLYTHFAFMNYHRKEVV 116
           P G  + +  V  GC V+V+   L  +L+PL L E DVILGMDFL TH A ++  RKEVV
Sbjct: 393 PAGRALKIEWVFNGCGVMVDGFCLEANLIPLDLVEFDVILGMDFLGTHGALVDCFRKEVV 452

Query: 117 FRKPIFLEVVFRG 130
           FR P   E+ FRG
Sbjct: 453 FRSPGKPEITFRG 465

The following BLAST results are available for this feature:
BLAST of CsGy2G006260.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016901625.18.7e-1959.55PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo][more]
XP_020524782.12.0e-1047.44uncharacterized protein LOC110007560 [Amborella trichopoda][more]
XP_022855167.11.3e-0945.24uncharacterized protein LOC111376436 [Olea europaea var. sylvestris][more]
XP_011625197.13.7e-0942.31uncharacterized protein LOC105421034 [Amborella trichopoda][more]
XP_008465228.11.4e-0856.92PREDICTED: uncharacterized protein LOC103502884 [Cucumis melo][more]
BLAST of CsGy2G006260.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G006260.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G006260.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0X6|A0A1S4E0X6_CUCME5.8e-1959.55uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=... [more]
tr|A0A1S3CNE9|A0A1S3CNE9_CUCME9.3e-0956.92uncharacterized protein LOC103502884 OS=Cucumis melo OX=3656 GN=LOC103502884 PE=... [more]
tr|A0A2P6RYR8|A0A2P6RYR8_ROSCH2.7e-0852.05Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=Rc... [more]
tr|A0A1R3KCL6|A0A1R3KCL6_9ROSI6.0e-0843.53Retroviral aspartyl protease OS=Corchorus olitorius OX=93759 GN=COLO4_09262 PE=4... [more]
tr|A0A2P6RHV2|A0A2P6RHV2_ROSCH1.0e-0750.68Putative nucleotidyltransferase, Ribonuclease H OS=Rosa chinensis OX=74649 GN=Rc... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G006260CsGy2G006260gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G006260.1.CDS.1CsGy2G006260.1.CDS.1CDS
CsGy2G006260.1.CDS.2CsGy2G006260.1.CDS.2CDS
CsGy2G006260.1.CDS.3CsGy2G006260.1.CDS.3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G006260.1CsGy2G006260.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3DG3DSA:2.40.70.10coord: 39..124
e-value: 9.1E-8
score: 33.9
NoneNo IPR availablePFAMPF08284RVP_2coord: 44..120
e-value: 2.2E-16
score: 59.7