CsGy2G006240.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G006240.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description50S ribosomal protein L2, chloroplastic
LocationChr2 : 4561546 .. 4562016 (-)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAAGCATAACGGCCCTATTGTTCCTATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACATAATTATCTTGAATATATTAACTATTTCTTTATTTTCCGATCGCCTGGAAGGGACAAAATGGAGATTCTTAATTATTCGTAATTAATTATTTCTTAATTTATTTTATAGAAATTCCCAAAAATCTCTTCATATACTCAGTCAAACTCGAACCCGGCGCCGGGTTCAAATTGAATTAA

mRNA sequence

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGAAATTCCCAAAAATCTCTTCATATACTCAGTCAAACTCGAACCCGGCGCCGGGTTCAAATTGAATTAA

Coding sequence (CDS)

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGAAATTCCCAAAAATCTCTTCATATACTCAGTCAAACTCGAACCCGGCGCCGGGTTCAAATTGAATTAA

Protein sequence

MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYEIPKNLFIYSVKLEPGAGFKLN
Homology
[Close]
BLAST of CsGy2G006240.1 vs. NCBI nr
Match: YP_009166935.1 (ribosomal protein L2 (chloroplast) [Osyris alba] >ALC75235.1 ribosomal protein L2 (chloroplast) [Osyris alba])

HSP 1 Score: 156.0 bits (393), Expect = 6.4e-35
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPR NLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRTNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY-----EIPKNLFIYSVKLEPGAGFKL 95
          RKIDFRRNEKDIY     ++P    I+++++  G G +L
Sbjct: 61 RKIDFRRNEKDIYGRIVTDMPLGTAIHNIEITLGKGGQL 99

[Close]
BLAST of CsGy2G006240.1 vs. NCBI nr
Match: YP_740517.1 (ribosomal protein L2 (chloroplast) [Citrus sinensis] >YP_740541.1 ribosomal protein L2 (chloroplast) [Citrus sinensis] >YP_009059390.1 ribosomal protein L2 (chloroplast) [Citrus aurantiifolia] >YP_009059418.1 ribosomal protein L2 (chloroplast) [Citrus aurantiifolia] >YP_009253688.1 ribosomal protein L2 (chloroplast) [Citrus platymamma] >YP_009253711.1 ribosomal protein L2 (chloroplast) [Citrus platymamma] >YP_009320138.1 ribosomal protein L2 (chloroplast) [Citrus depressa] >YP_009320160.1 ribosomal protein L2 (chloroplast) [Citrus depressa] >YP_009333813.1 ribosomal protein L2 (chloroplast) [Clausena excavata] >YP_009333984.1 ribosomal protein L2 (chloroplast) [Glycosmis pentaphylla] >YP_009353528.1 ribosomal protein L2 (plastid) [Citrus maxima] >YP_009353552.1 ribosomal protein L2 (plastid) [Citrus maxima] >YP_009364797.1 ribosomal protein L2 (plastid) [Citrus reticulata] >YP_009364821.1 ribosomal protein L2 (plastid) [Citrus reticulata] >YP_009365865.1 ribosomal protein L2 (plastid) [Citrus limon] >YP_009365893.1 ribosomal protein L2 (plastid) [Citrus limon] >Q09MB2.1 RecName: Full=50S ribosomal protein L2, chloroplastic >ABI49060.1 ribosomal protein L2 (chloroplast) [Citrus sinensis] >ABI49086.1 ribosomal protein L2 (chloroplast) [Citrus sinensis] >AIL50327.1 ribosomal protein L2 (chloroplast) [Citrus aurantiifolia] >AIL50355.1 ribosomal protein L2 (chloroplast) [Citrus aurantiifolia] >ALI86704.1 ribosomal protein L2 (chloroplast) [Citrus platymamma] >ALI86725.1 ribosomal protein L2 (chloroplast) [Citrus platymamma] >AOZ20767.1 ribosomal protein L2 (chloroplast) [Clausena excavata] >AOZ20938.1 ribosomal protein L2 (chloroplast) [Glycosmis pentaphylla] >BAV89982.1 ribosomal protein L2 (chloroplast) [Citrus depressa] >BAV90005.1 ribosomal protein L2 (chloroplast) [Citrus depressa] >AQX91160.1 ribosomal protein L2 (plastid) [Citrus maxima] >AQX91184.1 ribosomal protein L2 (plastid) [Citrus maxima] >ARI49972.1 ribosomal protein L2 (plastid) [Citrus reticulata] >ARI49996.1 ribosomal protein L2 (plastid) [Citrus reticulata] >ARJ61341.1 ribosomal protein L2 (plastid) [Citrus limon] >ARJ61342.1 ribosomal protein L2 (plastid) [Citrus limon] >BBD74123.1 ribosomal protein L2 (chloroplast) [Citrus depressa] >BBD74147.1 ribosomal protein L2 (chloroplast) [Citrus depressa])

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. NCBI nr
Match: YP_009107017.1 (ribosomal protein L2 (chloroplast) [Sapindus mukorossi] >YP_009262270.1 ribosomal protein L2 (chloroplast) [Spondias bahiensis] >YP_009262245.1 ribosomal protein L2 (chloroplast) [Spondias bahiensis] >YP_009262356.1 ribosomal protein L2 (chloroplast) [Spondias tuberosa] >YP_009262331.1 ribosomal protein L2 (chloroplast) [Spondias tuberosa] >YP_009383693.1 ribosomal protein L2 (plastid) [Pistacia vera] >YP_009383671.1 ribosomal protein L2 (plastid) [Pistacia vera] >YP_009431536.1 ribosomal protein L2 (chloroplast) [Spondias mombin] >YP_009431514.1 ribosomal protein L2 (chloroplast) [Spondias mombin] >YP_009477759.1 ribosomal protein L2 (chloroplast) [Pistacia weinmaniifolia] >ABV59097.2 ribosomal protein L2 (chloroplast) [Mangifera indica] >AIT96763.1 ribosomal protein L2 (chloroplast) [Sapindus mukorossi] >ANI86739.1 ribosomal protein L2 (chloroplast) [Spondias bahiensis] >ANI86740.1 ribosomal protein L2 (chloroplast) [Spondias bahiensis] >ANI86825.1 ribosomal protein L2 (chloroplast) [Spondias tuberosa] >ANI86826.1 ribosomal protein L2 (chloroplast) [Spondias tuberosa] >ARS43801.1 ribosomal protein L2 (plastid) [Pistacia vera] >ARS43802.1 ribosomal protein L2 (plastid) [Pistacia vera] >ASY95772.1 ribosomal protein L2 (chloroplast) [Spondias mombin] >ASY95773.1 ribosomal protein L2 (chloroplast) [Spondias mombin] >AVN66959.1 ribosomal protein L2 (chloroplast) [Pistacia weinmaniifolia])

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. NCBI nr
Match: ADM92727.1 (ribosomal protein L2, partial (chloroplast) [Davidia involucrata])

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. NCBI nr
Match: AEK71414.1 (ribosomal protein L2 (plastid) [Schinus terebinthifolia])

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TAIR10
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-34
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRN KDIY
Sbjct: 61 RKIDFRRNAKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TAIR10
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-34
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRN KDIY
Sbjct: 61 RKIDFRRNAKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match: sp|Q09MB2|RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match: sp|Q4VZK5|RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-36
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match: sp|Q0ZIX7|RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-35
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match: sp|Q332R5|RK2_LACSA (50S ribosomal protein L2, chloroplastic OS=Lactuca sativa OX=4236 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDS+VKSNPRNNLIYGQH CGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSKVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match: sp|A9L9D7|RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-35
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVD +VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDRKVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match: tr|A0A0M5JBQ9|A0A0M5JBQ9_9MAGN (Ribosomal protein L2 OS=Osyris alba OX=350585 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-35
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPR NLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRTNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY-----EIPKNLFIYSVKLEPGAGFKL 95
          RKIDFRRNEKDIY     ++P    I+++++  G G +L
Sbjct: 61 RKIDFRRNEKDIYGRIVTDMPLGTAIHNIEITLGKGGQL 99

[Close]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match: tr|A0A0S2XIM2|A0A0S2XIM2_9FABA (50S ribosomal protein L2, chloroplastic OS=Leucaena trichandra OX=190760 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match: tr|A0A158V0P7|A0A158V0P7_9FABA (50S ribosomal protein L2, chloroplastic OS=Prosopis glandulosa OX=102697 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match: tr|A0A223FXU4|A0A223FXU4_9ROSA (50S ribosomal protein L2, chloroplastic OS=Malus trilobata OX=106570 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

[Close]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match: tr|A0A286KTY1|A0A286KTY1_9ROSI (50S ribosomal protein L2, chloroplastic OS=Gynostemma cardiospermum OX=1739658 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.6e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60
          MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY
Sbjct: 1  MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLY 60

Query: 61 RKIDFRRNEKDIY 74
          RKIDFRRNEKDIY
Sbjct: 61 RKIDFRRNEKDIY 73

The following BLAST results are available for this feature:
BLAST of CsGy2G006240.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009166935.16.4e-3577.78ribosomal protein L2 (chloroplast) [Osyris alba] >ALC75235.1 ribosomal protein L... [more]
YP_740517.15.4e-34100.00ribosomal protein L2 (chloroplast) [Citrus sinensis] >YP_740541.1 ribosomal prot... [more]
YP_009107017.15.4e-34100.00ribosomal protein L2 (chloroplast) [Sapindus mukorossi] >YP_009262270.1 ribosoma... [more]
ADM92727.15.4e-34100.00ribosomal protein L2, partial (chloroplast) [Davidia involucrata][more]
AEK71414.15.4e-34100.00ribosomal protein L2 (plastid) [Schinus terebinthifolia][more]
BLAST of CsGy2G006240.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.11.7e-3494.52ribosomal protein L2[more]
ATCG01310.11.7e-3494.52ribosomal protein L2[more]
BLAST of CsGy2G006240.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q09MB2|RK2_CITSI1.8e-36100.0050S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=... [more]
sp|Q4VZK5|RK2_CUCSA1.8e-36100.0050S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
sp|Q0ZIX7|RK2_VITVI1.5e-3598.6350S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=... [more]
sp|Q332R5|RK2_LACSA2.0e-3597.2650S ribosomal protein L2, chloroplastic OS=Lactuca sativa OX=4236 GN=rpl2-A PE=3... [more]
sp|A9L9D7|RK2_LEMMI2.0e-3597.2650S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1[more]
BLAST of CsGy2G006240.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0M5JBQ9|A0A0M5JBQ9_9MAGN4.2e-3577.78Ribosomal protein L2 OS=Osyris alba OX=350585 PE=4 SV=1[more]
tr|A0A0S2XIM2|A0A0S2XIM2_9FABA3.6e-34100.0050S ribosomal protein L2, chloroplastic OS=Leucaena trichandra OX=190760 GN=rpl2... [more]
tr|A0A158V0P7|A0A158V0P7_9FABA3.6e-34100.0050S ribosomal protein L2, chloroplastic OS=Prosopis glandulosa OX=102697 GN=rpl2... [more]
tr|A0A223FXU4|A0A223FXU4_9ROSA3.6e-34100.0050S ribosomal protein L2, chloroplastic OS=Malus trilobata OX=106570 GN=rpl2 PE=... [more]
tr|A0A286KTY1|A0A286KTY1_9ROSI3.6e-34100.0050S ribosomal protein L2, chloroplastic OS=Gynostemma cardiospermum OX=1739658 G... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR002171Ribosomal_L2
IPR022666Rbsml_prot_L2_RNA-bd_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016740 transferase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G006240CsGy2G006240gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G006240.1.CDS.2CsGy2G006240.1.CDS.2CDS
CsGy2G006240.1.CDS.1CsGy2G006240.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G006240.1.exon.2CsGy2G006240.1.exon.2exon
CsGy2G006240.1.exon.1CsGy2G006240.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G006240.1CsGy2G006240.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 25..89
e-value: 2.8E-17
score: 64.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR13691:SF539S RIBOSOMAL PROTEIN L2, MITOCHONDRIALcoord: 3..73
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 40..72
e-value: 3.3E-9
score: 36.5
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 3..73
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 2..75