CsGy2G005620.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G005620.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Photosystem II CP43 reaction center protein
Location	Chr2 : 3906401 .. 3906799 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCTTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

mRNA sequence

ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Coding sequence (CDS)

ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Protein sequence

MYFKLFITVELGETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Homology

[Close]

BLAST of CsGy2G005620.1 vs. NCBI nr
Match: PHT54971.1 (Photosystem II CP43 reaction center protein [Capsicum baccatum])

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLRAPWLEPLRG NGLDLSRLKKDIQPWQERRSAEYMTH PLGHLWHAGRARA
Sbjct: 58  GETMRFWDLRAPWLEPLRGLNGLDLSRLKKDIQPWQERRSAEYMTHTPLGHLWHAGRARA 117

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 118 AAAGFEKGIDRDLEPVLFMTPLN 140

[Close]

BLAST of CsGy2G005620.1 vs. NCBI nr
Match: PHT78945.1 (Photosystem II CP43 reaction center protein [Capsicum annuum])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-39
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLR+PWLE LRGPNGLDLSRLKKDIQPWQERRS EYMTHAPLGHLW+AGRARA
Sbjct: 79  GETMRFWDLRSPWLEHLRGPNGLDLSRLKKDIQPWQERRSVEYMTHAPLGHLWNAGRARA 138

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 139 AAAGFEKGIDRDLEPVLFMTPLN 161

[Close]

BLAST of CsGy2G005620.1 vs. NCBI nr
Match: YP_001001530.1 (photosystem II CP43 chlorophyll apoprotein [Nuphar advena] >YP_009415068.1 photosystem II 44 kDa protein (chloroplast) [Barclaya longifolia] >YP_009488847.1 photosystem II 43 kDa protein (chloroplast) [Nuphar longifolia] >YP_009488932.1 photosystem II 43 kDa protein (chloroplast) [Nuphar pumila] >YP_009489016.1 photosystem II 43 kDa protein (chloroplast) [Nuphar shimadae] >A1XFV1.1 RecName: Full=Photosystem II CP43 reaction center protein; AltName: Full=PSII 43 kDa protein; AltName: Full=Protein CP-43; Flags: Precursor >ABC60454.1 photosystem II CP43 chlorophyll apoprotein (chloroplast) [Nuphar advena] >ASB29470.1 photosystem II 44 kDa protein (chloroplast) [Barclaya longifolia] >AWD77647.1 photosystem II 43 kDa protein (chloroplast) [Nuphar longifolia] >AWD77732.1 photosystem II 43 kDa protein (chloroplast) [Nuphar pumila] >AWD77816.1 photosystem II 43 kDa protein (chloroplast) [Nuphar shimadae])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. NCBI nr
Match: ABU85512.1 (photosystem II CP43 chlorophyll apoprotein, partial (chloroplast) [Passiflora biflora])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. NCBI nr
Match: AEB72135.1 (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum] >AEB72221.1 photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 341 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 400

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 401 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 460

[Close]

BLAST of CsGy2G005620.1 vs. TAIR10
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 159.8 bits (403), Expect = 8.0e-40
Identity = 81/121 (66.94%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVL MTPL
Sbjct: 413 EINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. Swiss-Prot
Match: sp|Q2QD93|PSBC_CUCSA (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. Swiss-Prot
Match: sp|A1XFV1|PSBC_NUPAD (Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. Swiss-Prot
Match: sp|Q6EW52|PSBC_NYMAL (Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. Swiss-Prot
Match: sp|Q2VEI0|PSBC_SOLTU (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. Swiss-Prot
Match: sp|B1A931|PSBC_CARPA (Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.4e-39
Identity = 81/121 (66.94%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRD EPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDLEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. TrEMBL
Match: tr|A0A2G2XC93|A0A2G2XC93_CAPBA (Photosystem II CP43 reaction center protein OS=Capsicum baccatum OX=33114 GN=CQW23_03457 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-40
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLRAPWLEPLRG NGLDLSRLKKDIQPWQERRSAEYMTH PLGHLWHAGRARA
Sbjct: 58  GETMRFWDLRAPWLEPLRGLNGLDLSRLKKDIQPWQERRSAEYMTHTPLGHLWHAGRARA 117

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 118 AAAGFEKGIDRDLEPVLFMTPLN 140

[Close]

BLAST of CsGy2G005620.1 vs. TrEMBL
Match: tr|A0A2G2ZAP5|A0A2G2ZAP5_CAPAN (Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_16997 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLR+PWLE LRGPNGLDLSRLKKDIQPWQERRS EYMTHAPLGHLW+AGRARA
Sbjct: 79  GETMRFWDLRSPWLEHLRGPNGLDLSRLKKDIQPWQERRSVEYMTHAPLGHLWNAGRARA 138

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 139 AAAGFEKGIDRDLEPVLFMTPLN 161

[Close]

BLAST of CsGy2G005620.1 vs. TrEMBL
Match: tr|G1CBZ5|G1CBZ5_SOLTU (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 341 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 400

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 401 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 460

[Close]

BLAST of CsGy2G005620.1 vs. TrEMBL
Match: tr|I6N953|I6N953_DATST (Photosystem II CP43 reaction center protein OS=Datura stramonium OX=4076 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]

BLAST of CsGy2G005620.1 vs. TrEMBL
Match: tr|X2F5I4|X2F5I4_LAGSI (Photosystem II CP43 reaction center protein OS=Lagenaria siceraria OX=3668 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

The following BLAST results are available for this feature:

BLAST of CsGy2G005620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT54971.1	2.2e-40	95.18	Photosystem II CP43 reaction center protein [Capsicum baccatum]	[more]
PHT78945.1	2.5e-39	92.77	Photosystem II CP43 reaction center protein [Capsicum annuum]	[more]
YP_001001530.1	5.2e-37	67.77	photosystem II CP43 chlorophyll apoprotein [Nuphar advena] >YP_009415068.1 photo...	[more]
ABU85512.1	5.2e-37	67.77	photosystem II CP43 chlorophyll apoprotein, partial (chloroplast) [Passiflora bi...	[more]
AEB72135.1	5.2e-37	67.77	photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum] >AE...	[more]

BLAST of CsGy2G005620.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00280.1	8.0e-40	66.94	photosystem II reaction center protein C	[more]

BLAST of CsGy2G005620.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2QD93\|PSBC_CUCSA	1.7e-39	67.77	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
sp\|A1XFV1\|PSBC_NUPAD	1.7e-39	67.77	Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE...	[more]
sp\|Q6EW52\|PSBC_NYMAL	1.7e-39	67.77	Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE...	[more]
sp\|Q2VEI0\|PSBC_SOLTU	1.7e-39	67.77	Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC...	[more]
sp\|B1A931\|PSBC_CARPA	8.4e-39	66.94	Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=...	[more]

BLAST of CsGy2G005620.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G2XC93\|A0A2G2XC93_CAPBA	1.5e-40	95.18	Photosystem II CP43 reaction center protein OS=Capsicum baccatum OX=33114 GN=CQW...	[more]
tr\|A0A2G2ZAP5\|A0A2G2ZAP5_CAPAN	1.6e-39	92.77	Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_1...	[more]
tr\|G1CBZ5\|G1CBZ5_SOLTU	3.4e-37	67.77	Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC...	[more]
tr\|I6N953\|I6N953_DATST	3.4e-37	67.77	Photosystem II CP43 reaction center protein OS=Datura stramonium OX=4076 GN=psbC...	[more]
tr\|X2F5I4\|X2F5I4_LAGSI	3.4e-37	67.77	Photosystem II CP43 reaction center protein OS=Lagenaria siceraria OX=3668 GN=ps...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0019684	photosynthesis, light reaction
GO:0009767	photosynthetic electron transport chain

Vocabulary: **Cellular Component**
Term	Definition
GO:0009521	photosystem
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016168	chlorophyll binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036001	PS_II_antenna-like_sf
IPR000932	PS_antenna-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016168	chlorophyll binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G005620	CsGy2G005620	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G005620.1.CDS.2	CsGy2G005620.1.CDS.2	CDS
CsGy2G005620.1.CDS.1	CsGy2G005620.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G005620.1.exon.2	CsGy2G005620.1.exon.2	exon
CsGy2G005620.1.exon.1	CsGy2G005620.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G005620.1	CsGy2G005620.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.670		coord: 6..58 e-value: 1.7E-25 score: 90.8
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 58..89 e-value: 5.5E-7 score: 28.6
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	FAMILY NOT NAMED	coord: 12..61 coord: 61..94
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	SSF161077	Photosystem II antenna protein-like	coord: 12..93