CsGy2G005620 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G005620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPhotosystem II CP43 reaction center protein
LocationChr2 : 3906401 .. 3906799 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCTTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

mRNA sequence

ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Coding sequence (CDS)

ATGTACTTCAAATTGTTTATCACCGTCGAATTGGGAGAGACTAAGCGTTTTTGGGATCTGCGTGCTCCGTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Protein sequence

MYFKLFITVELGETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Homology
[Close]
BLAST of CsGy2G005620 vs. NCBI nr
Match: PHT54971.1 (Photosystem II CP43 reaction center protein [Capsicum baccatum])

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLRAPWLEPLRG NGLDLSRLKKDIQPWQERRSAEYMTH PLGHLWHAGRARA
Sbjct: 58  GETMRFWDLRAPWLEPLRGLNGLDLSRLKKDIQPWQERRSAEYMTHTPLGHLWHAGRARA 117

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 118 AAAGFEKGIDRDLEPVLFMTPLN 140

[Close]
BLAST of CsGy2G005620 vs. NCBI nr
Match: PHT78945.1 (Photosystem II CP43 reaction center protein [Capsicum annuum])

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-39
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLR+PWLE LRGPNGLDLSRLKKDIQPWQERRS EYMTHAPLGHLW+AGRARA
Sbjct: 79  GETMRFWDLRSPWLEHLRGPNGLDLSRLKKDIQPWQERRSVEYMTHAPLGHLWNAGRARA 138

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 139 AAAGFEKGIDRDLEPVLFMTPLN 161

[Close]
BLAST of CsGy2G005620 vs. NCBI nr
Match: YP_001001530.1 (photosystem II CP43 chlorophyll apoprotein [Nuphar advena] >YP_009415068.1 photosystem II 44 kDa protein (chloroplast) [Barclaya longifolia] >YP_009488847.1 photosystem II 43 kDa protein (chloroplast) [Nuphar longifolia] >YP_009488932.1 photosystem II 43 kDa protein (chloroplast) [Nuphar pumila] >YP_009489016.1 photosystem II 43 kDa protein (chloroplast) [Nuphar shimadae] >A1XFV1.1 RecName: Full=Photosystem II CP43 reaction center protein; AltName: Full=PSII 43 kDa protein; AltName: Full=Protein CP-43; Flags: Precursor >ABC60454.1 photosystem II CP43 chlorophyll apoprotein (chloroplast) [Nuphar advena] >ASB29470.1 photosystem II 44 kDa protein (chloroplast) [Barclaya longifolia] >AWD77647.1 photosystem II 43 kDa protein (chloroplast) [Nuphar longifolia] >AWD77732.1 photosystem II 43 kDa protein (chloroplast) [Nuphar pumila] >AWD77816.1 photosystem II 43 kDa protein (chloroplast) [Nuphar shimadae])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. NCBI nr
Match: ABU85512.1 (photosystem II CP43 chlorophyll apoprotein, partial (chloroplast) [Passiflora biflora])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. NCBI nr
Match: AEB72135.1 (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum] >AEB72221.1 photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum])

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 341 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 400

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 401 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 460

[Close]
BLAST of CsGy2G005620 vs. TAIR10
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 159.8 bits (403), Expect = 8.0e-40
Identity = 81/121 (66.94%), Postives = 81/121 (66.94%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVL MTPL
Sbjct: 413 EINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPL 472

[Close]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match: sp|Q2QD93|PSBC_CUCSA (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match: sp|A1XFV1|PSBC_NUPAD (Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match: sp|Q6EW52|PSBC_NYMAL (Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match: sp|Q2VEI0|PSBC_SOLTU (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-39
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match: sp|B1A931|PSBC_CARPA (Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.4e-39
Identity = 81/121 (66.94%), Postives = 81/121 (66.94%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRD EPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDLEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. TrEMBL
Match: tr|A0A2G2XC93|A0A2G2XC93_CAPBA (Photosystem II CP43 reaction center protein OS=Capsicum baccatum OX=33114 GN=CQW23_03457 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-40
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLRAPWLEPLRG NGLDLSRLKKDIQPWQERRSAEYMTH PLGHLWHAGRARA
Sbjct: 58  GETMRFWDLRAPWLEPLRGLNGLDLSRLKKDIQPWQERRSAEYMTHTPLGHLWHAGRARA 117

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 118 AAAGFEKGIDRDLEPVLFMTPLN 140

[Close]
BLAST of CsGy2G005620 vs. TrEMBL
Match: tr|A0A2G2ZAP5|A0A2G2ZAP5_CAPAN (Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_16997 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGHLWHAGRARA 71
           GET RFWDLR+PWLE LRGPNGLDLSRLKKDIQPWQERRS EYMTHAPLGHLW+AGRARA
Sbjct: 79  GETMRFWDLRSPWLEHLRGPNGLDLSRLKKDIQPWQERRSVEYMTHAPLGHLWNAGRARA 138

Query: 72  AAAGFEKGIDRDFEPVLFMTPLN 95
           AAAGFEKGIDRD EPVLFMTPLN
Sbjct: 139 AAAGFEKGIDRDLEPVLFMTPLN 161

[Close]
BLAST of CsGy2G005620 vs. TrEMBL
Match: tr|G1CBZ5|G1CBZ5_SOLTU (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 341 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 400

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 401 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 460

[Close]
BLAST of CsGy2G005620 vs. TrEMBL
Match: tr|I6N953|I6N953_DATST (Photosystem II CP43 reaction center protein OS=Datura stramonium OX=4076 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

[Close]
BLAST of CsGy2G005620 vs. TrEMBL
Match: tr|X2F5I4|X2F5I4_LAGSI (Photosystem II CP43 reaction center protein OS=Lagenaria siceraria OX=3668 GN=psbC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 82/121 (67.77%), Postives = 82/121 (67.77%), Query Frame = 0 

Query: 12  GETKRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL----------- 71
           GET RFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL           
Sbjct: 353 GETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVAT 412

Query: 72  ---------------------------GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 95
                                      GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL
Sbjct: 413 EINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPL 472

The following BLAST results are available for this feature:
BLAST of CsGy2G005620 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT54971.12.2e-4095.18Photosystem II CP43 reaction center protein [Capsicum baccatum][more]
PHT78945.12.5e-3992.77Photosystem II CP43 reaction center protein [Capsicum annuum][more]
YP_001001530.15.2e-3767.77photosystem II CP43 chlorophyll apoprotein [Nuphar advena] >YP_009415068.1 photo... [more]
ABU85512.15.2e-3767.77photosystem II CP43 chlorophyll apoprotein, partial (chloroplast) [Passiflora bi... [more]
AEB72135.15.2e-3767.77photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum] >AE... [more]
BLAST of CsGy2G005620 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.18.0e-4066.94photosystem II reaction center protein C[more]
BLAST of CsGy2G005620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2QD93|PSBC_CUCSA1.7e-3967.77Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P... [more]
sp|A1XFV1|PSBC_NUPAD1.7e-3967.77Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE... [more]
sp|Q6EW52|PSBC_NYMAL1.7e-3967.77Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE... [more]
sp|Q2VEI0|PSBC_SOLTU1.7e-3967.77Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC... [more]
sp|B1A931|PSBC_CARPA8.4e-3966.94Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=... [more]
BLAST of CsGy2G005620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2G2XC93|A0A2G2XC93_CAPBA1.5e-4095.18Photosystem II CP43 reaction center protein OS=Capsicum baccatum OX=33114 GN=CQW... [more]
tr|A0A2G2ZAP5|A0A2G2ZAP5_CAPAN1.6e-3992.77Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_1... [more]
tr|G1CBZ5|G1CBZ5_SOLTU3.4e-3767.77Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC... [more]
tr|I6N953|I6N953_DATST3.4e-3767.77Photosystem II CP43 reaction center protein OS=Datura stramonium OX=4076 GN=psbC... [more]
tr|X2F5I4|X2F5I4_LAGSI3.4e-3767.77Photosystem II CP43 reaction center protein OS=Lagenaria siceraria OX=3668 GN=ps... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
Vocabulary: INTERPRO
TermDefinition
IPR036001PS_II_antenna-like_sf
IPR000932PS_antenna-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
molecular_function GO:0016168 chlorophyll binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G005620.1CsGy2G005620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.10.670coord: 6..58
e-value: 1.7E-25
score: 90.8
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 58..89
e-value: 5.5E-7
score: 28.6
IPR000932Photosystem antenna protein-likePANTHERPTHR33180FAMILY NOT NAMEDcoord: 12..61
coord: 61..94
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILYSSF161077Photosystem II antenna protein-likecoord: 12..93

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G005620Csa2G037270Cucumber (Chinese Long) v2cgybcuB056
CsGy2G005620CsaV3_2G007850Cucumber (Chinese Long) v3cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G005620Cucumber (Gy14) v2cgybcgybB010
CsGy2G005620Cucurbita maxima (Rimu)cgybcmaB155
CsGy2G005620Cucurbita maxima (Rimu)cgybcmaB164
CsGy2G005620Cucurbita maxima (Rimu)cgybcmaB181
CsGy2G005620Cucurbita maxima (Rimu)cgybcmaB252
CsGy2G005620Cucurbita moschata (Rifu)cgybcmoB149
CsGy2G005620Cucurbita moschata (Rifu)cgybcmoB157
CsGy2G005620Cucurbita moschata (Rifu)cgybcmoB172
CsGy2G005620Cucurbita moschata (Rifu)cgybcmoB240
CsGy2G005620Cucurbita pepo (Zucchini)cgybcpeB164
CsGy2G005620Cucurbita pepo (Zucchini)cgybcpeB206
CsGy2G005620Cucurbita pepo (Zucchini)cgybcpeB233
CsGy2G005620Cucurbita pepo (Zucchini)cgybcpeB274
CsGy2G005620Cucumber (Chinese Long) v2cgybcuB052
CsGy2G005620Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G005620Melon (DHL92) v3.5.1cgybmeB097
CsGy2G005620Melon (DHL92) v3.5.1cgybmeB120
CsGy2G005620Melon (DHL92) v3.6.1cgybmedB094
CsGy2G005620Melon (DHL92) v3.6.1cgybmedB118
CsGy2G005620Watermelon (Charleston Gray)cgybwcgB102
CsGy2G005620Watermelon (Charleston Gray)cgybwcgB139
CsGy2G005620Watermelon (97103) v1cgybwmB155
CsGy2G005620Watermelon (97103) v1cgybwmB160
CsGy2G005620Wild cucumber (PI 183967)cgybcpiB050
CsGy2G005620Wild cucumber (PI 183967)cgybcpiB056
CsGy2G005620Silver-seed gourdcarcgybB0061
CsGy2G005620Silver-seed gourdcarcgybB0138
CsGy2G005620Silver-seed gourdcarcgybB0510
CsGy2G005620Silver-seed gourdcarcgybB0902
CsGy2G005620Cucumber (Chinese Long) v3cgybcucB058
CsGy2G005620Watermelon (97103) v2cgybwmbB104
CsGy2G005620Watermelon (97103) v2cgybwmbB138
CsGy2G005620Wax gourdcgybwgoB132
CsGy2G005620Wax gourdcgybwgoB207