CsGy2G000830.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000830.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pseudo histidine-containing phosphotransfer protein 5
Location	Chr2 : 513014 .. 513893 (-)
Sequence length	204

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTGTAAGCCCTAATTCAAAATATTTTACTTCAATTCTTTAACTTTTATTTATTTTTTGTTTTTTAATTGTGAAAATTCAACAATTATTAGTAGAGGGAACACATTTGTTTAAAATTTTAATAGTATCTCTTTTAGTTATTCATATATAAAACTATTGACCTTGAGGTTAGACGTTTTCTTCTTCATCTTATATTGTTGGAAAAAAAAATAATAAAACGAGGCTTCCTGACAGGGAGCGGCCTTCGTGCAATCTCAGAACACTGGAAAGGCCACTTCATAAGTTTAAGGGGCCTGTGTCAGGTTCGATTTTCTTATTTCTTTTTAGTTCAATGAGATCTGAACTTAGTTTGTGTACTTTTAGATTTCATTTATTTAGAATTTTTCTTGGTGGATAATAAATTCAATTTCACATTTAGTAATTTAGTAATTATATGTTCTTATTTTGAATTTATGAGAAAATTGAATGTTTGAAACTCTGCTAAACAAAACAGAAAATAAAATGTATAGAAATCATGAACATTAGAGTTGGACTTGGAAAGACTATAGTTTTACCTTTTTACCACTTGAATTTAAAAAGTAGTTTATATGAATACTTTTCCATTGAAAGGTAGATGTTCTGTTTGTTTTGTGTTCTCAATTATGGTTTATTAACTATTCTATTATGGCTTATTTATGTAGCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

mRNA sequence

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

Coding sequence (CDS)

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

Protein sequence

GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQACREDDVDG

Homology

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BLAST of CsGy2G000830.1 vs. NCBI nr
Match: XP_004141161.1 (PREDICTED: uncharacterized protein LOC101210842 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC 60
          GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC
Sbjct: 22 GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC 81

Query: 61 REDDVDG 68
          REDDVDG
Sbjct: 82 REDDVDG 88

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BLAST of CsGy2G000830.1 vs. NCBI nr
Match: XP_008458783.1 (PREDICTED: pseudo histidine-containing phosphotransfer protein 5 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 63/90 (70.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GILS QF QVEQLGFDDPHFLQRLLTVYFRESTQSI SLENAL                 
Sbjct: 22  GILSDQFVQVEQLGFDDPHFLQRLLTVYFRESTQSIASLENALERPSCNLRTLERPLHKF 81

Query: 61  ------IGAIRVTREVDLALQACREDDVDG 68
                 IGAIRVTREVDLALQACREDDV G
Sbjct: 82  KGASASIGAIRVTREVDLALQACREDDVPG 111

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BLAST of CsGy2G000830.1 vs. NCBI nr
Match: XP_022946862.1 (pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCNPGALERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ E+D A+  CR++DV+
Sbjct: 81  KGASASIGAIKVSNEIDEAIHGCRDEDVE 109

[Close]

BLAST of CsGy2G000830.1 vs. NCBI nr
Match: XP_023545371.1 (histidine-containing phosphotransfer protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCNPSALERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ ++D A+  CR++DVD
Sbjct: 81  KGASASIGAIKVSNQIDDAIHGCRDEDVD 109

[Close]

BLAST of CsGy2G000830.1 vs. NCBI nr
Match: XP_022998952.1 (pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCDLSVLERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ E+D A+  CR++DV+
Sbjct: 81  KGASTSIGAIKVSNEIDDAIHGCRDEDVE 109

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BLAST of CsGy2G000830.1 vs. TrEMBL
Match: tr|A0A1S3C868|A0A1S3C868_CUCME (pseudo histidine-containing phosphotransfer protein 5 OS=Cucumis melo OX=3656 GN=LOC103498077 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 63/90 (70.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GILS QF QVEQLGFDDPHFLQRLLTVYFRESTQSI SLENAL                 
Sbjct: 22  GILSDQFVQVEQLGFDDPHFLQRLLTVYFRESTQSIASLENALERPSCNLRTLERPLHKF 81

Query: 61  ------IGAIRVTREVDLALQACREDDVDG 68
                 IGAIRVTREVDLALQACREDDV G
Sbjct: 82  KGASASIGAIRVTREVDLALQACREDDVPG 111

[Close]

BLAST of CsGy2G000830.1 vs. TrEMBL
Match: tr|V4N8H9|V4N8H9_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015244mg PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-04
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L+ Q+ Q+E L  D +PHF+  ++T+YFR+S   I +LE+  IGAI+++ E+  A   
Sbjct: 1  GYLNCQYTQIEALEKDKNPHFIVEVITLYFRDSPNVIAALEHEFIGAIKISSELTKANTF 60

Query: 61 CREDDVDG 68
           +  +++G
Sbjct: 61 LQAGNIEG 68

[Close]

BLAST of CsGy2G000830.1 vs. TrEMBL
Match: tr|A0A287GAA8|A0A287GAA8_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-04
Identity = 23/68 (33.82%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L  QF QVE L  +  P+F + +++++F++S + +T++E A+IGA ++  E      +
Sbjct: 21 GYLDEQFCQVEDLQDEASPNFAEEVVSLFFKDSARLVTNIEQAIIGASKMNNECTSFRNS 80

Query: 61 CREDDVDG 68
          CRE++ +G
Sbjct: 81 CREENAEG 88

[Close]

BLAST of CsGy2G000830.1 vs. TrEMBL
Match: tr|A0A078HZS8|A0A078HZS8_BRANA (BnaC02g08940D protein OS=Brassica napus OX=3708 GN=BnaC02g08940D PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.9e-04
Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L+ Q+ Q+E L  D  P+F+  ++T+YFR+S   I +LE+  IGAI++  E++ A   
Sbjct: 21 GYLNCQYTQIEALEKDSSPYFIVEIITLYFRDSPNVIAALEHEFIGAIKINNELEKANIL 80

Query: 61 CREDDVDG 68
           +  +V+G
Sbjct: 81 LQAGNVEG 88

The following BLAST results are available for this feature:

BLAST of CsGy2G000830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141161.1	2.4e-28	100.00	PREDICTED: uncharacterized protein LOC101210842 [Cucumis sativus]	[more]
XP_008458783.1	7.5e-22	70.00	PREDICTED: pseudo histidine-containing phosphotransfer protein 5 [Cucumis melo]	[more]
XP_022946862.1	1.1e-12	48.31	pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita moschata]	[more]
XP_023545371.1	1.1e-12	48.31	histidine-containing phosphotransfer protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998952.1	1.4e-12	48.31	pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita maxima]	[more]

BLAST of CsGy2G000830.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G000830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G000830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C868\|A0A1S3C868_CUCME	4.9e-22	70.00	pseudo histidine-containing phosphotransfer protein 5 OS=Cucumis melo OX=3656 GN...	[more]
tr\|V4N8H9\|V4N8H9_EUTSA	3.6e-04	36.76	Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100...	[more]
tr\|A0A287GAA8\|A0A287GAA8_HORVV	4.7e-04	33.82	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
tr\|A0A078HZS8\|A0A078HZS8_BRANA	7.9e-04	36.76	BnaC02g08940D protein OS=Brassica napus OX=3708 GN=BnaC02g08940D PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR036641	HPT_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G000830	CsGy2G000830	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G000830.1.CDS.2	CsGy2G000830.1.CDS.2	CDS
CsGy2G000830.1.CDS.1	CsGy2G000830.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G000830.1.exon.2	CsGy2G000830.1.exon.2	exon
CsGy2G000830.1.exon.1	CsGy2G000830.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G000830.1	CsGy2G000830.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036641	HPT domain superfamily	GENE3D	G3DSA:1.20.120.160		coord: 1..67 e-value: 3.3E-6 score: 29.0
IPR036641	HPT domain superfamily	SUPERFAMILY	SSF47226	Histidine-containing phosphotransfer domain, HPT domain	coord: 5..66