CsGy2G000830 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000830
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	pseudo histidine-containing phosphotransfer protein 5
Location	Chr2 : 513014 .. 513893 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTGTAAGCCCTAATTCAAAATATTTTACTTCAATTCTTTAACTTTTATTTATTTTTTGTTTTTTAATTGTGAAAATTCAACAATTATTAGTAGAGGGAACACATTTGTTTAAAATTTTAATAGTATCTCTTTTAGTTATTCATATATAAAACTATTGACCTTGAGGTTAGACGTTTTCTTCTTCATCTTATATTGTTGGAAAAAAAAATAATAAAACGAGGCTTCCTGACAGGGAGCGGCCTTCGTGCAATCTCAGAACACTGGAAAGGCCACTTCATAAGTTTAAGGGGCCTGTGTCAGGTTCGATTTTCTTATTTCTTTTTAGTTCAATGAGATCTGAACTTAGTTTGTGTACTTTTAGATTTCATTTATTTAGAATTTTTCTTGGTGGATAATAAATTCAATTTCACATTTAGTAATTTAGTAATTATATGTTCTTATTTTGAATTTATGAGAAAATTGAATGTTTGAAACTCTGCTAAACAAAACAGAAAATAAAATGTATAGAAATCATGAACATTAGAGTTGGACTTGGAAAGACTATAGTTTTACCTTTTTACCACTTGAATTTAAAAAGTAGTTTATATGAATACTTTTCCATTGAAAGGTAGATGTTCTGTTTGTTTTGTGTTCTCAATTATGGTTTATTAACTATTCTATTATGGCTTATTTATGTAGCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

mRNA sequence

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

Coding sequence (CDS)

GGAATTTTGAGTGCACAATTTGCCCAAGTTGAGCAATTAGGGTTTGATGATCCACATTTTCTCCAGAGGCTTCTCACTGTGTACTTTAGAGAATCAACCCAGTCTATTACTTCTTTGGAAAATGCACTCATTGGTGCCATTAGAGTGACCCGTGAAGTAGACCTTGCACTTCAAGCTTGCAGGGAAGATGACGTGGATGGGTAA

Protein sequence

GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQACREDDVDG

Homology

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BLAST of CsGy2G000830 vs. NCBI nr
Match: XP_004141161.1 (PREDICTED: uncharacterized protein LOC101210842 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC 60
          GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC
Sbjct: 22 GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQAC 81

Query: 61 REDDVDG 68
          REDDVDG
Sbjct: 82 REDDVDG 88

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BLAST of CsGy2G000830 vs. NCBI nr
Match: XP_008458783.1 (PREDICTED: pseudo histidine-containing phosphotransfer protein 5 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-22
Identity = 63/90 (70.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GILS QF QVEQLGFDDPHFLQRLLTVYFRESTQSI SLENAL                 
Sbjct: 22  GILSDQFVQVEQLGFDDPHFLQRLLTVYFRESTQSIASLENALERPSCNLRTLERPLHKF 81

Query: 61  ------IGAIRVTREVDLALQACREDDVDG 68
                 IGAIRVTREVDLALQACREDDV G
Sbjct: 82  KGASASIGAIRVTREVDLALQACREDDVPG 111

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BLAST of CsGy2G000830 vs. NCBI nr
Match: XP_022946862.1 (pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita moschata])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCNPGALERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ E+D A+  CR++DV+
Sbjct: 81  KGASASIGAIKVSNEIDEAIHGCRDEDVE 109

[Close]

BLAST of CsGy2G000830 vs. NCBI nr
Match: XP_023545371.1 (histidine-containing phosphotransfer protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCNPSALERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ ++D A+  CR++DVD
Sbjct: 81  KGASASIGAIKVSNQIDDAIHGCRDEDVD 109

[Close]

BLAST of CsGy2G000830 vs. NCBI nr
Match: XP_022998952.1 (pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GIL  QF  VE+LG DDPHFL+R+LT YFRESTQSI +L+NAL                 
Sbjct: 21  GILGEQFIHVERLGDDDPHFLERVLTTYFRESTQSIATLQNALRSPSCDLSVLERPLHKF 80

Query: 61  ------IGAIRVTREVDLALQACREDDVD 67
                 IGAI+V+ E+D A+  CR++DV+
Sbjct: 81  KGASTSIGAIKVSNEIDDAIHGCRDEDVE 109

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BLAST of CsGy2G000830 vs. TrEMBL
Match: tr|A0A1S3C868|A0A1S3C868_CUCME (pseudo histidine-containing phosphotransfer protein 5 OS=Cucumis melo OX=3656 GN=LOC103498077 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.9e-22
Identity = 63/90 (70.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1   GILSAQFAQVEQLGFDDPHFLQRLLTVYFRESTQSITSLENAL----------------- 60
           GILS QF QVEQLGFDDPHFLQRLLTVYFRESTQSI SLENAL                 
Sbjct: 22  GILSDQFVQVEQLGFDDPHFLQRLLTVYFRESTQSIASLENALERPSCNLRTLERPLHKF 81

Query: 61  ------IGAIRVTREVDLALQACREDDVDG 68
                 IGAIRVTREVDLALQACREDDV G
Sbjct: 82  KGASASIGAIRVTREVDLALQACREDDVPG 111

[Close]

BLAST of CsGy2G000830 vs. TrEMBL
Match: tr|V4N8H9|V4N8H9_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015244mg PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-04
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L+ Q+ Q+E L  D +PHF+  ++T+YFR+S   I +LE+  IGAI+++ E+  A   
Sbjct: 1  GYLNCQYTQIEALEKDKNPHFIVEVITLYFRDSPNVIAALEHEFIGAIKISSELTKANTF 60

Query: 61 CREDDVDG 68
           +  +++G
Sbjct: 61 LQAGNIEG 68

[Close]

BLAST of CsGy2G000830 vs. TrEMBL
Match: tr|A0A287GAA8|A0A287GAA8_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-04
Identity = 23/68 (33.82%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L  QF QVE L  +  P+F + +++++F++S + +T++E A+IGA ++  E      +
Sbjct: 21 GYLDEQFCQVEDLQDEASPNFAEEVVSLFFKDSARLVTNIEQAIIGASKMNNECTSFRNS 80

Query: 61 CREDDVDG 68
          CRE++ +G
Sbjct: 81 CREENAEG 88

[Close]

BLAST of CsGy2G000830 vs. TrEMBL
Match: tr|A0A078HZS8|A0A078HZS8_BRANA (BnaC02g08940D protein OS=Brassica napus OX=3708 GN=BnaC02g08940D PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.9e-04
Identity = 25/68 (36.76%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1  GILSAQFAQVEQLGFD-DPHFLQRLLTVYFRESTQSITSLENALIGAIRVTREVDLALQA 60
          G L+ Q+ Q+E L  D  P+F+  ++T+YFR+S   I +LE+  IGAI++  E++ A   
Sbjct: 21 GYLNCQYTQIEALEKDSSPYFIVEIITLYFRDSPNVIAALEHEFIGAIKINNELEKANIL 80

Query: 61 CREDDVDG 68
           +  +V+G
Sbjct: 81 LQAGNVEG 88

The following BLAST results are available for this feature:

BLAST of CsGy2G000830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141161.1	2.4e-28	100.00	PREDICTED: uncharacterized protein LOC101210842 [Cucumis sativus]	[more]
XP_008458783.1	7.5e-22	70.00	PREDICTED: pseudo histidine-containing phosphotransfer protein 5 [Cucumis melo]	[more]
XP_022946862.1	1.1e-12	48.31	pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita moschata]	[more]
XP_023545371.1	1.1e-12	48.31	histidine-containing phosphotransfer protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998952.1	1.4e-12	48.31	pseudo histidine-containing phosphotransfer protein 5-like [Cucurbita maxima]	[more]

BLAST of CsGy2G000830 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G000830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G000830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C868\|A0A1S3C868_CUCME	4.9e-22	70.00	pseudo histidine-containing phosphotransfer protein 5 OS=Cucumis melo OX=3656 GN...	[more]
tr\|V4N8H9\|V4N8H9_EUTSA	3.6e-04	36.76	Uncharacterized protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v100...	[more]
tr\|A0A287GAA8\|A0A287GAA8_HORVV	4.7e-04	33.82	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	[more]
tr\|A0A078HZS8\|A0A078HZS8_BRANA	7.9e-04	36.76	BnaC02g08940D protein OS=Brassica napus OX=3708 GN=BnaC02g08940D PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000160	phosphorelay signal transduction system

Vocabulary: **INTERPRO**
Term	Definition
IPR036641	HPT_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000830.1	CsGy2G000830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036641	HPT domain superfamily	GENE3D	G3DSA:1.20.120.160		coord: 1..67 e-value: 3.3E-6 score: 29.0
IPR036641	HPT domain superfamily	SUPERFAMILY	SSF47226	Histidine-containing phosphotransfer domain, HPT domain	coord: 5..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G000830	Lsi11G002290	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G000830	MELO3C031579.2	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G000830	Carg10838	Silver-seed gourd	carcgybB0573

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G000830	Wild cucumber (PI 183967)	cgybcpiB053
CsGy2G000830	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G000830	Silver-seed gourd	carcgybB0041
CsGy2G000830	Silver-seed gourd	carcgybB0102
CsGy2G000830	Silver-seed gourd	carcgybB0886
CsGy2G000830	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G000830	Watermelon (97103) v2	cgybwmbB098
CsGy2G000830	Watermelon (97103) v2	cgybwmbB123
CsGy2G000830	Watermelon (97103) v2	cgybwmbB150
CsGy2G000830	Wax gourd	cgybwgoB138
CsGy2G000830	Wax gourd	cgybwgoB202
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G000830	Cucumber (Gy14) v2	cgybcgybB011
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB154
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB163
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB175
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB202
CsGy2G000830	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB146
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB155
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB169
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB179
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB196
CsGy2G000830	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB204
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB225
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB230
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB232
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB269
CsGy2G000830	Cucurbita pepo (Zucchini)	cgybcpeB272
CsGy2G000830	Cucumber (Chinese Long) v2	cgybcuB053
CsGy2G000830	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G000830	Bottle gourd (USVL1VR-Ls)	cgyblsiB123
CsGy2G000830	Bottle gourd (USVL1VR-Ls)	cgyblsiB125
CsGy2G000830	Melon (DHL92) v3.5.1	cgybmeB096
CsGy2G000830	Melon (DHL92) v3.5.1	cgybmeB113
CsGy2G000830	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G000830	Melon (DHL92) v3.6.1	cgybmedB093
CsGy2G000830	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G000830	Watermelon (Charleston Gray)	cgybwcgB128
CsGy2G000830	Watermelon (Charleston Gray)	cgybwcgB151
CsGy2G000830	Watermelon (97103) v1	cgybwmB112
CsGy2G000830	Watermelon (97103) v1	cgybwmB115
CsGy2G000830	Watermelon (97103) v1	cgybwmB154