CsGy1G030120.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCATGAAGTGTCATCAAATGAATGGTCCGACAAATAAAGTGTCAAGTGGACTTAGAAGTGCCATGATGAGTAGGGGTAGGCCAGCTGCTCCCATTACTAAATTCATAGTATTTGGCACCAAAAAGCACTTTCCAAAGAACATTCTCTTCATGAAGAAATCTCCAAATTGTATGTCCTAACGCTTTTAAGATCATCGACTTGATGACAACTTATCTAGGATATCCTATGGCCTATGCGGTTTCATGTGTTAAGGAAAATTAGGATTTATGATTATTATTATTTTCCTTTTATGTATTTTGCTTTAGTAGGTTTTTTGAGATCTATTTATTTTCCTACATAAAAAGTCATTATTTAGTATGTACTATGAATTATTATATTTAATAATATATAAAATTAACATGGTATCAGAGCTTAGGGTTTTGTCTCATTGAACCCTAGCAGTCACATTCTTCAATCTCTGCCTTCGTTGATCAGTCATCGATGGAGGCAGACCTGTCGCTTGCTTGTTGTAACAAGTCTTGTTCTGCCTACCCTTGCTCTAGTTCACACGCACTTCAATCCATTTTGTTGAGCTTTCATATTGTACTTCAATCCATCTGTTGTTGAACAAATTTGCACCTGTCTCAAATCCATTCTTCTTGTTTGCACACAGCAACCAAAGTTCGCTGTTCTCCGTGTATTCTGCCTAACTCCATCTTTTCCCTTCCTATCACGTGCCGCTTCAGATCTGATTTGCAGCCGCTACAGACTGTTCGAATCACGTTTGTGCTCCCTATTTCGTGAAGATCGTGCAACATTTGGTTTAGTCATTAAGGCCGGCTCATTTAAGTTTTGGTTCAACCAGTTTTGTTCGGTGTTTTCATTTTGGTTTAGTCAAGCCAATTCAGTTCACTTCAGTAAAACCAGTTTGAGTTCGGTTTGCTTCAAGTTGGTTCATTTGCAATTATGGCAAATCAAAATAATAATAATCATGATGATGATGATGATGATGATGATGATGGGTTTTTGTTCCATTTTCAAATCAATCTTTGTGGGGTTTGTTTAGATACTAGAAGTTCTTGGTTTTGTTCTTCGTGGGATTGTGTTTCTAGTCTAGAAGTTCTTGTTTTTGATCTTCATGAGTTTTTGGTTCTATCCTAGATATGTTGATTTGATTTGGACATTTTTTCACAAACTCAAGTTGTTCGTGATTTTACACCTTGGGTTTGGGGGAGTGTGGTAAAAGAAAACTAGGATTTGTGATTATTATATTTTCGTTTTATGTATTTTCCTTCAGTAGGTTTGTTTGAGGTCTATTTATTTGCCTACATAAAAGGTTATGTACTCTGAATTATTATATTCAATAATATAGTAAATTAACTGTGTAAAATGTGTCAGTGGGTGGTTTTTCTTGTAGGATGAAATGAGGTGCACATTAATTGGCTTTAACGCTTTTAAGATCATGGATTTTATGACAACTTATCATTATTGTTGTTATTAATTTTATTATTAAATGGCAAGAAAATCTAAAATTTATTTACAGGTTGTTTCTTCTTCTTATTGTTTGTTTCTTTAACAAAGTGTTTTATACAAATTTGTGCATGAATGATTTACAGCAGAGGAGTATACCCGTAATCTTCTTATAGTGTTGTCAATGGCATATGATTATTACATTTTCTATAGGACACTGTTTATTTATCTCTCTTCTACTTGTTTGTCCGGTTAAACAAATAGTATGACCTAAAAATCATTAAGGGAAGTAATAGGCTAAATAATATTGTATTAGAGACTTAAGTTTGCTCCACCGAATATTCTCAGGTTGAAAACCTTACACGCAAGGCACAACTTCAAGAAGTTGAACTAGAAAGAACAAGTAAACAGTTGAAGGAAGCAATATCAATAGCAAGTGAGGAGGCTGCAAGATGCAATGCAGCCAAAGAAGTGATCAAGTCACTAACTGCACAAGTAAGTTGATCTTTTTTTATGAGCTATTCTAATACTTCATGATTTCCATTATATGACTACATAAATGACCAAATGGGTATTATATTTGTCAAACTCAATAAATCTAAAAACATAATTGCCTACCAAACAAGATTTTATATTATGTAAATTAATCTACCTACAACAGAAATACATTATCGATGATTCTAAAACCAAGCAAGAAAAAGAAAGAGTACATGATTTGAACTCCGAAGTAATTGAATTATTAAAGTGCATCCTGGTCATGATTCCTTACATATGTTGATTTCCAGGAATGAAGGAAAAAAAACATATTTTGGTTTCCGTTTCTAATAGTCCTGAGAATAAATTTCAGGAACTGTATTTAAAAACTTTTAATTGTTAATTAAAAAACTATAAGCTCAACTTGTTTTTTCATTCTTTTTTCCATTTCTTTTTTTACTTTAGACGTTTGTGTCTTGGACATAAACTTTTCAGCTGGTTTTCCATCCATTTTTCATTTGTCATCTTTTTCAGTTCGTTTGGTGCAAGTTTAATTCATAATATGTAAGTTATTCTTGCTTGTGTTGTGTGTTATATTCCAACAAAGCATTTATCTTGATGAGCTACGTTACTCAAAATTAAAAGTATGTCTGGAACAAGTTGCTCCATTGTCTTCAGCTCTGATGCATTTCAATCTTATTCCCTTAATGTTATATGAGAATTTGATGGAAATGAATACTGAAATTTTTTTTCCATCGGATCTTGAACAGCTGAAGGAAATGGCTGAAAGGCTGCCAGTTGGAGCTGCTCGTAACATTAAATCAACTCTTGCCTCTTTCAGCTCCGGTCCACCCTTCAATAATTTGATCAACACTTTCATAGACCAATTAAGTGGTCAAGAAACATCCTTAGAGACGGACTCAAACAGTTCAAGTGTCCAGTTGCTTTCTAATGGATCAAGCACTGCAAATAACCAGTCTTCAACTCAAAGCAAATCGAGTCAATTGGATTCAGCAAAGAATGGAAATAGAATCAAAGAAACTGAATCTCGCCAAGAAGCAGAATGGGTCGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCACAACCAGGAGGTGCCAAGGATCTTAAGCGAGTTCGTTTCAGGTAAGCATGTTTTACCCAATTTTATACCCAGTTCCTATAAAATACTGCTTCAGGTGCCCATGGTGGGAGACCTACTCGTTGAAGCTCATGATAACTAAGTACTTTTTGTTCGCCCAGCTGTTCATTTCTTGGTTGTGTATACTTGCAGGTTGTTTGATAATCAAGAACAAGATTCCAAATTTATTTTTACAAATAAAAAAGATTATTATGTCCCTAACCATTTGGTTTTTTGTTTTTGAAAATTTTAAGTCTTTCTTTTCTATTTTTTACCATGGGTTTCATCTTTCAGATAAATTTTTAGCCAAATTCCAAATTTCAAAAACATATTTTTAAAATTTACTTTTTCTAGTTTTCATAACTTGACTTGATTTTTTAACATTGGTAGAAGGTGAATATAACAAAGCAAAGAAACTTAGAGGTGGAATTGGTGTTTATAGACTTAAATCATTTTGCCAACATTATCTAAATAGGTGGTCAACTAACTCTATTCAAAAGTGAAGAGCTAAATACAAAATTATTTTCAAACAAGACCTGCAGTTTGTTGGAAGAAGTATTTTTCTTTTGATAAAGTTTGCTTATGGTATCATATCTCATCATCACAAATGTGGAGTACCAATTGCAGTTTAGAGCTTGTTGATGTCATAGCAACTGGAAATTCTGTTTCAATTATCCAACTCTATGTCATTCATAATTGGGAAGTTTTTGTAATTAGCGTCTCTCAGAGGGGGTTAATCATTTCCACTGCCCTTAGGTTGTCTTTGTTTTGCCTAAAAAACAAAAATGTGGAGTATCCAGTATCAAGTATCAAGGAGCAGTAACATTATCTCTTTCTCATTTCGTCAATATTTTAAGGTCATACAAGAGGGTTAATTTTTCTAGATGTAGTAGTGACTTCAGAACACCTTGATTTTACATTTCATTTCTTATGATTTTTTTGTTCGTACGATTAATCATGCAAGCAATCGATTCCTTCATGATCTTTTCTCCATGCAAAGATTTCTCTGAATTTTAAATGACCAGTTCATGTTCGATGCAGTCGAAAGCGGTTTACAGAGAAACAAGCAGAGCACTGGTGGGCAGAGAACCGTGCACGAGTTTACGAGCGATACAATGTACGGGTGATGGACAAGTCTAGTATAGGGATTGGAAGTGAAGAGTTGACTCATTGACTTGTGCAAACAGCCACAGAAATCAAATCATTTTGTATATGAAAAACAAAAAGGTTTGTTCAATTTCCAAGCTCTACTTAACTACTGGGTCATATTGACCATTGAGATTTAGATTGGAACTATTAGAGGGAAAATTAGATGAATTTGATGATTTGTTTTTCGAATGTCGATTTCATATTTCTTTCAGGTTTAGTGTTTTTCTTTTTTTAATTTCTTTTTCCATTCTTCCCCTGTATGGCTGTGTGGGGGTTATGAGAAATGTAAATACTACTAGTTGCTGTCTATTGATAAAATCAGTTGCAGTATAAATTCTAAAAGCATCTTCCTCTCCTGCCCTCTCTTTTTCTAGTAATATTCTAAATGATTACTTACATTTATTCTTTTTTCATTCAAACATATAATTATTTGTTGAAGTTTCTTGTTTTG ATGTCCATGAAGTGTCATCAAATGAATGGTCCGACAAATAAAGTGTCAAGTGGACTTAGAAGTGCCATGATGAGTAGGGGTAGGCCAGCTGCTCCCATTACTAAATTCATAGTATTTGGCACCAAAAAGCACTTTCCAAAGAACATTCTCTTCATGAAGAAATCTCCAAATTATCTGATTTGCAGCCGCTACAGACTGTTCGAATCACGTTTGTGCTCCCTATTTCGTGAAGATCGTGCAACATTTGGTTTAGTCATTAAGGCCGGCTCATTTAAGTTTTGGTTCAACCAGTTTTGTTCGGTGTTTTCATTTTGGTTTAGTCAAGCCAATTCAGTTCACTTCAGTAAAACCAGTTTGAGTTCGGTTGAAAACCTTACACGCAAGGCACAACTTCAAGAAGTTGAACTAGAAAGAACAAGTAAACAGTTGAAGGAAGCAATATCAATAGCAAGTGAGGAGGCTGCAAGATGCAATGCAGCCAAAGAAGTGATCAAGTCACTAACTGCACAACTGAAGGAAATGGCTGAAAGGCTGCCAGTTGGAGCTGCTCGTAACATTAAATCAACTCTTGCCTCTTTCAGCTCCGGTCCACCCTTCAATAATTTGATCAACACTTTCATAGACCAATTAAGTGGTCAAGAAACATCCTTAGAGACGGACTCAAACAGTTCAAGTGTCCAGTTGCTTTCTAATGGATCAAGCACTGCAAATAACCAGTCTTCAACTCAAAGCAAATCGAGTCAATTGGATTCAGCAAAGAATGGAAATAGAATCAAAGAAACTGAATCTCGCCAAGAAGCAGAATGGGTCGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCACAACCAGGAGGTGCCAAGGATCTTAAGCGAGTTCGTTTCAGTCGAAAGCGGTTTACAGAGAAACAAGCAGAGCACTGGTGGGCAGAGAACCGTGCACGAGTTTACGAGCGATACAATGTACGGGTGATGGACAAGTCTAGTATAGGGATTGGAAGTGAAGAGTTGACTCATTGACTTGTGCAAACAGCCACAGAAATCAAATCATTTTGTATATGAAAAACAAAAAGGTTTGTTCAATTTCCAAGCTCTACTTAACTACTGGGTCATATTGACCATTGAGATTTAGATTGGAACTATTAGAGGGAAAATTAGATGAATTTGATGATTTGTTTTTCGAATGTCGATTTCATATTTCTTTCAGGTTTAGTGTTTTTCTTTTTTTAATTTCTTTTTCCATTCTTCCCCTGTATGGCTGTGTGGGGGTTATGAGAAATGTAAATACTACTAGTTGCTGTCTATTGATAAAATCAGTTGCAGTATAAATTCTAAAAGCATCTTCCTCTCCTGCCCTCTCTTTTTCTAGTAATATTCTAAATGATTACTTACATTTATTCTTTTTTCATTCAAACATATAATTATTTGTTGAAGTTTCTTGTTTTG ATGTCCATGAAGTGTCATCAAATGAATGGTCCGACAAATAAAGTGTCAAGTGGACTTAGAAGTGCCATGATGAGTAGGGGTAGGCCAGCTGCTCCCATTACTAAATTCATAGTATTTGGCACCAAAAAGCACTTTCCAAAGAACATTCTCTTCATGAAGAAATCTCCAAATTATCTGATTTGCAGCCGCTACAGACTGTTCGAATCACGTTTGTGCTCCCTATTTCGTGAAGATCGTGCAACATTTGGTTTAGTCATTAAGGCCGGCTCATTTAAGTTTTGGTTCAACCAGTTTTGTTCGGTGTTTTCATTTTGGTTTAGTCAAGCCAATTCAGTTCACTTCAGTAAAACCAGTTTGAGTTCGGTTGAAAACCTTACACGCAAGGCACAACTTCAAGAAGTTGAACTAGAAAGAACAAGTAAACAGTTGAAGGAAGCAATATCAATAGCAAGTGAGGAGGCTGCAAGATGCAATGCAGCCAAAGAAGTGATCAAGTCACTAACTGCACAACTGAAGGAAATGGCTGAAAGGCTGCCAGTTGGAGCTGCTCGTAACATTAAATCAACTCTTGCCTCTTTCAGCTCCGGTCCACCCTTCAATAATTTGATCAACACTTTCATAGACCAATTAAGTGGTCAAGAAACATCCTTAGAGACGGACTCAAACAGTTCAAGTGTCCAGTTGCTTTCTAATGGATCAAGCACTGCAAATAACCAGTCTTCAACTCAAAGCAAATCGAGTCAATTGGATTCAGCAAAGAATGGAAATAGAATCAAAGAAACTGAATCTCGCCAAGAAGCAGAATGGGTCGAGCAAGATGAGCCTGGTGTATATATTACACTCACCTCACAACCAGGAGGTGCCAAGGATCTTAAGCGAGTTCGTTTCAGTCGAAAGCGGTTTACAGAGAAACAAGCAGAGCACTGGTGGGCAGAGAACCGTGCACGAGTTTACGAGCGATACAATGTACGGGTGATGGACAAGTCTAGTATAGGGATTGGAAGTGAAGAGTTGACTCATTGA MSMKCHQMNGPTNKVSSGLRSAMMSRGRPAAPITKFIVFGTKKHFPKNILFMKKSPNYLICSRYRLFESRLCSLFREDRATFGLVIKAGSFKFWFNQFCSVFSFWFSQANSVHFSKTSLSSVENLTRKAQLQEVELERTSKQLKEAISIASEEAARCNAAKEVIKSLTAQLKEMAERLPVGAARNIKSTLASFSSGPPFNNLINTFIDQLSGQETSLETDSNSSSVQLLSNGSSTANNQSSTQSKSSQLDSAKNGNRIKETESRQEAEWVEQDEPGVYITLTSQPGGAKDLKRVRFSRKRFTEKQAEHWWAENRARVYERYNVRVMDKSSIGIGSEELTH
BLAST of CsGy1G030120.1 vs. NCBI nr
Match: XP_004139058.2 (PREDICTED: uncharacterized protein LOC101219074 [Cucumis sativus]) HSP 1 Score: 370.9 bits (951), Expect = 4.5e-99 Identity = 218/221 (98.64%), Postives = 220/221 (99.55%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. NCBI nr
Match: XP_008450356.1 (PREDICTED: uncharacterized protein LOC103491987 [Cucumis melo]) HSP 1 Score: 360.5 bits (924), Expect = 6.1e-96 Identity = 196/221 (88.69%), Postives = 200/221 (90.50%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. NCBI nr
Match: XP_022148922.1 (uncharacterized protein LOC111017472 [Momordica charantia]) HSP 1 Score: 346.3 bits (887), Expect = 1.2e-91 Identity = 187/221 (84.62%), Postives = 194/221 (87.78%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. NCBI nr
Match: XP_022973773.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima]) HSP 1 Score: 342.8 bits (878), Expect = 1.3e-90 Identity = 187/221 (84.62%), Postives = 192/221 (86.88%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. NCBI nr
Match: XP_023530885.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 341.7 bits (875), Expect = 2.9e-90 Identity = 186/221 (84.16%), Postives = 192/221 (86.88%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TAIR10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain) HSP 1 Score: 240.7 bits (613), Expect = 1.3e-63 Identity = 144/231 (62.34%), Postives = 170/231 (73.59%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TAIR10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain) HSP 1 Score: 197.6 bits (501), Expect = 1.2e-50 Identity = 127/217 (58.53%), Postives = 149/217 (68.66%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TAIR10
Match: AT1G76950.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain) HSP 1 Score: 135.6 bits (340), Expect = 5.8e-32 Identity = 91/240 (37.92%), Postives = 135/240 (56.25%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TAIR10
Match: AT5G42140.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain) HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21 Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TAIR10
Match: AT1G65920.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain) HSP 1 Score: 94.0 bits (232), Expect = 1.9e-19 Identity = 72/214 (33.64%), Postives = 109/214 (50.93%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. Swiss-Prot
Match: sp|Q947D2|PRAF1_ARATH (PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.0e-30 Identity = 91/240 (37.92%), Postives = 135/240 (56.25%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. Swiss-Prot
Match: sp|Q6YUB8|BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BRXL1 PE=2 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.2e-15 Identity = 36/59 (61.02%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. Swiss-Prot
Match: sp|Q8GZ92|BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana OX=3702 GN=BRXL4 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 8.1e-15 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. Swiss-Prot
Match: sp|Q5HZ09|BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRXL3 PE=2 SV=2) HSP 1 Score: 77.8 bits (190), Expect = 2.6e-13 Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. Swiss-Prot
Match: sp|O82281|BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana OX=3702 GN=BRXL1 PE=2 SV=2) HSP 1 Score: 74.7 bits (182), Expect = 2.2e-12 Identity = 55/175 (31.43%), Postives = 81/175 (46.29%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TrEMBL
Match: tr|A0A1S3BPQ5|A0A1S3BPQ5_CUCME (uncharacterized protein LOC103491987 OS=Cucumis melo OX=3656 GN=LOC103491987 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96 Identity = 196/221 (88.69%), Postives = 200/221 (90.50%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TrEMBL
Match: tr|A0A061GST9|A0A061GST9_THECC (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_040948 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 5.3e-72 Identity = 156/223 (69.96%), Postives = 176/223 (78.92%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TrEMBL
Match: tr|A0A1S3BNH2|A0A1S3BNH2_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103491479 OS=Cucumis melo OX=3656 GN=LOC103491479 PE=4 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71 Identity = 150/223 (67.26%), Postives = 176/223 (78.92%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TrEMBL
Match: tr|A0A0A0KEK0|A0A0A0KEK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432780 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71 Identity = 150/223 (67.26%), Postives = 176/223 (78.92%), Query Frame = 0
BLAST of CsGy1G030120.1 vs. TrEMBL
Match: tr|A0A2P5XLF1|A0A2P5XLF1_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16496 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 8.5e-70 Identity = 151/223 (67.71%), Postives = 173/223 (77.58%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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