CsGy1G019720.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G019720.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 18613054 .. 18613276 (-)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGTTTTGGATTTGTATATACATAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

mRNA sequence

ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

Coding sequence (CDS)

ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

Protein sequence

MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGCNKSRS
Homology
[Close]
BLAST of CsGy1G019720.1 vs. NCBI nr
Match: KGN65419.1 (hypothetical protein Csa_1G420330 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 4.4e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60
          MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC
Sbjct: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60

Query: 61 NKSRS 66
          NKSRS
Sbjct: 61 NKSRS 65

[Close]
BLAST of CsGy1G019720.1 vs. TrEMBL
Match: tr|A0A0A0LWR0|A0A0A0LWR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420330 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60
          MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC
Sbjct: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60

Query: 61 NKSRS 66
          NKSRS
Sbjct: 61 NKSRS 65

The following BLAST results are available for this feature:
BLAST of CsGy1G019720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65419.14.4e-27100.00hypothetical protein Csa_1G420330 [Cucumis sativus][more]
BLAST of CsGy1G019720.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G019720.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G019720.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWR0|A0A0A0LWR0_CUCSA2.9e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420330 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G019720CsGy1G019720gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G019720.1.CDS.2CsGy1G019720.1.CDS.2CDS
CsGy1G019720.1.CDS.1CsGy1G019720.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G019720.1.exon.2CsGy1G019720.1.exon.2exon
CsGy1G019720.1.exon.1CsGy1G019720.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G019720.1CsGy1G019720.1-proteinpolypeptide