CsGy1G019720 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G019720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 18613054 .. 18613276 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGTTTTGGATTTGTATATACATAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

mRNA sequence

ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

Coding sequence (CDS)

ATGATATACAGCGGTGATGAACATGATGATAGGTTGATGAATATGGAAGTAGTACCAGTAATGGTGGTGGTGGATGAGGTGAAGCAAATTCGATTGTCCAACGTTGATGTGATCGTCTCCAATCTCCATCAGTCGTTTTTAGAGATGTCATTTTTTAAGGGTCTAATACCATTTGGATGCAACAAGTCGAGAAGTTAG

Protein sequence

MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGCNKSRS

Homology

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BLAST of CsGy1G019720 vs. NCBI nr
Match: KGN65419.1 (hypothetical protein Csa_1G420330 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 4.4e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60
          MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC
Sbjct: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60

Query: 61 NKSRS 66
          NKSRS
Sbjct: 61 NKSRS 65

[Close]

BLAST of CsGy1G019720 vs. TrEMBL
Match: tr|A0A0A0LWR0|A0A0A0LWR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420330 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60
          MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC
Sbjct: 1  MIYSGDEHDDRLMNMEVVPVMVVVDEVKQIRLSNVDVIVSNLHQSFLEMSFFKGLIPFGC 60

Query: 61 NKSRS 66
          NKSRS
Sbjct: 61 NKSRS 65

The following BLAST results are available for this feature:

BLAST of CsGy1G019720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65419.1	4.4e-27	100.00	hypothetical protein Csa_1G420330 [Cucumis sativus]	[more]

BLAST of CsGy1G019720 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G019720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G019720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWR0\|A0A0A0LWR0_CUCSA	2.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420330 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019720.1	CsGy1G019720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G019720	Csa1G420330	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G019720	CsaV3_1G031240	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G019720	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G019720	Silver-seed gourd	carcgybB0779
CsGy1G019720	Cucumber (Chinese Long) v3	cgybcucB023
CsGy1G019720	Watermelon (97103) v2	cgybwmbB064
CsGy1G019720	Wax gourd	cgybwgoB095
CsGy1G019720	Cucumber (Gy14) v2	cgybcgybB014
CsGy1G019720	Cucurbita maxima (Rimu)	cgybcmaB015
CsGy1G019720	Cucurbita maxima (Rimu)	cgybcmaB041
CsGy1G019720	Cucurbita moschata (Rifu)	cgybcmoB015
CsGy1G019720	Cucurbita moschata (Rifu)	cgybcmoB038
CsGy1G019720	Cucurbita pepo (Zucchini)	cgybcpeB042
CsGy1G019720	Cucurbita pepo (Zucchini)	cgybcpeB110
CsGy1G019720	Bottle gourd (USVL1VR-Ls)	cgyblsiB061
CsGy1G019720	Melon (DHL92) v3.5.1	cgybmeB039
CsGy1G019720	Melon (DHL92) v3.6.1	cgybmedB033
CsGy1G019720	Watermelon (Charleston Gray)	cgybwcgB064
CsGy1G019720	Watermelon (97103) v1	cgybwmB080