CsGy1G014730.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014730.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 10632752 .. 10632970 (-)
Sequence length	219

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

mRNA sequence

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Coding sequence (CDS)

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Protein sequence

MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS

Homology

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BLAST of CsGy1G014730.1 vs. NCBI nr
Match: KGN64950.1 (hypothetical protein Csa_1G166790 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 60
           MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS
Sbjct: 35  MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 94

Query: 61  SSSIPSRIIDLS 73
           SSSIPSRIIDLS
Sbjct: 95  SSSIPSRIIDLS 106

[Close]

BLAST of CsGy1G014730.1 vs. TrEMBL
Match: tr|A0A0A0LSQ9|A0A0A0LSQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166790 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 60
           MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS
Sbjct: 35  MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 94

Query: 61  SSSIPSRIIDLS 73
           SSSIPSRIIDLS
Sbjct: 95  SSSIPSRIIDLS 106

The following BLAST results are available for this feature:

BLAST of CsGy1G014730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64950.1	5.0e-32	100.00	hypothetical protein Csa_1G166790 [Cucumis sativus]	[more]

BLAST of CsGy1G014730.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G014730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G014730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSQ9\|A0A0A0LSQ9_CUCSA	3.3e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G014730	CsGy1G014730	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G014730.1.CDS.1	CsGy1G014730.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G014730.1.exon.1	CsGy1G014730.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G014730.1	CsGy1G014730.1-protein	polypeptide