CsGy1G014730 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G014730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 10632752 .. 10632970 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

mRNA sequence

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Coding sequence (CDS)

ATGGAAGACGACCGCTTGGATCTCAATCAATGCCTACCTATTGTCCTCCCTTGGCCTTTCAAGAATAAACTCTGTGTTATGTCTATGCCTACTGCGAAGAAAAACCAATTGGCCAGAAACCAAAAACTTCTCCTTCGTGAATTGGAACTTCACTCCTCTATCAATCACAACAGACCTTCTTCCTCATCCATCCCCAGCAGGATCATTGATTTATCATGA

Protein sequence

MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPSSSSIPSRIIDLS

Homology

[Close]

BLAST of CsGy1G014730 vs. NCBI nr
Match: KGN64950.1 (hypothetical protein Csa_1G166790 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 60
           MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS
Sbjct: 35  MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 94

Query: 61  SSSIPSRIIDLS 73
           SSSIPSRIIDLS
Sbjct: 95  SSSIPSRIIDLS 106

[Close]

BLAST of CsGy1G014730 vs. TrEMBL
Match: tr|A0A0A0LSQ9|A0A0A0LSQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166790 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 60
           MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS
Sbjct: 35  MEDDRLDLNQCLPIVLPWPFKNKLCVMSMPTAKKNQLARNQKLLLRELELHSSINHNRPS 94

Query: 61  SSSIPSRIIDLS 73
           SSSIPSRIIDLS
Sbjct: 95  SSSIPSRIIDLS 106

The following BLAST results are available for this feature:

BLAST of CsGy1G014730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64950.1	5.0e-32	100.00	hypothetical protein Csa_1G166790 [Cucumis sativus]	[more]

BLAST of CsGy1G014730 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G014730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G014730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSQ9\|A0A0A0LSQ9_CUCSA	3.3e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G166790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014730.1	CsGy1G014730.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G014730	Csa1G166790	Cucumber (Chinese Long) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G014730	Cucumber (Chinese Long) v3	cgybcucB007
CsGy1G014730	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G014730	Watermelon (97103) v2	cgybwmbB009
CsGy1G014730	Watermelon (97103) v2	cgybwmbB019
CsGy1G014730	Watermelon (97103) v2	cgybwmbB026
CsGy1G014730	Wax gourd	cgybwgoB046
CsGy1G014730	Cucurbita maxima (Rimu)	cgybcmaB078
CsGy1G014730	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G014730	Cucurbita maxima (Rimu)	cgybcmaB119
CsGy1G014730	Cucurbita maxima (Rimu)	cgybcmaB123
CsGy1G014730	Cucurbita maxima (Rimu)	cgybcmaB139
CsGy1G014730	Cucurbita moschata (Rifu)	cgybcmoB072
CsGy1G014730	Cucurbita moschata (Rifu)	cgybcmoB085
CsGy1G014730	Cucurbita moschata (Rifu)	cgybcmoB113
CsGy1G014730	Cucurbita moschata (Rifu)	cgybcmoB130
CsGy1G014730	Cucurbita pepo (Zucchini)	cgybcpeB005
CsGy1G014730	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G014730	Cucurbita pepo (Zucchini)	cgybcpeB150
CsGy1G014730	Bottle gourd (USVL1VR-Ls)	cgyblsiB005
CsGy1G014730	Bottle gourd (USVL1VR-Ls)	cgyblsiB017
CsGy1G014730	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G014730	Melon (DHL92) v3.5.1	cgybmeB010
CsGy1G014730	Melon (DHL92) v3.5.1	cgybmeB061
CsGy1G014730	Melon (DHL92) v3.6.1	cgybmedB009
CsGy1G014730	Melon (DHL92) v3.6.1	cgybmedB057
CsGy1G014730	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G014730	Watermelon (Charleston Gray)	cgybwcgB027
CsGy1G014730	Watermelon (97103) v1	cgybwmB007
CsGy1G014730	Watermelon (97103) v1	cgybwmB043
CsGy1G014730	Watermelon (97103) v1	cgybwmB057
CsGy1G014730	Watermelon (97103) v1	cgybwmB060
CsGy1G014730	Watermelon (97103) v1	cgybwmB067
CsGy1G014730	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G014730	Wild cucumber (PI 183967)	cgybcpiB021
CsGy1G014730	Silver-seed gourd	carcgybB0000
CsGy1G014730	Silver-seed gourd	carcgybB0904
CsGy1G014730	Silver-seed gourd	carcgybB0971