CsGy1G013960.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAGATTCATAGATTTTAGGGTTTTCTCGTGTAAAAAAGCAGGATCACTGTTCTGGATCGTTGATTTCTTTTGCTCTTGTTGCATATTTTGGAATTGAATGAATGAAAATCGGTTTACATGATTCTAATTCTTTTGTTAATTGCTTGGTCATGTCCTCATCGTTCAGATTGTTTGCTGGGCGGTCTCTGAAGATTTACCATAATTTCACCTTAACAAATTTGTATGCCTGAGACTGAGTCTGACTTCAACTAGTATTTTGAGTTTGTTGCTTTTCAATTGTCCAGGCAGAAGGTATTGATTCAATGCCGTTGAATATGCTTCAAATTTTTCCTCTTAGTTCGAGTTCTAGGGTGAATAATTTTTTATTTATGTTTTGAAGATGCCTGTGAAAATGATTGTACAAACTGTAGATTTCTGTGTTTTTAATGGGAACTTTTCATTGTGGGGTTTCTACAATTTCTTGGACAATGATTTCTGTGTCCCTTATGTTTGGTATCTTCAATTTGGTATCAGGGTGTTGAATCCATAGGCATAAATCTTGAATCCAACCCCATTTTATTGATTAGTGGTTAAAGTTGTCATCCACGGGTGATGTTCTGAGTTAATTCAACACGTTGGAGAATTTTCAACCAATAAACAGTCCCATCAATCCACAGGTTAAGCTTCACATTGTGGCCATTTCTGAGCATCTATTGTTTGAGAATGAAAAATTATTGCTTTCCTTTTTACCTTTGGATGATTTTGAGTTTAGGCAAGGGAGATCTAAGTGCTTTTTGTCCTTTTTACCTTAGAATGAAAAATTATTGCTTTCCTACTCTGTCTCAAGGCCTCCTCTTTGTTTGACCAGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTAG ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTAG ATGGCGCCAAAGGCCGAGAAGAAGCCCGCCGAGAAAAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAACTCCGGCCGAGAAGAAGCCAAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCCAGCAAGGCAATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTAG MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEDENGWERADATTPPR
BLAST of CsGy1G013960.1 vs. NCBI nr
Match: XP_004139453.1 (PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. NCBI nr
Match: XP_011654070.1 (PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2B.7 [Cucumis sativus] >KGN64852.1 Histone H2B [Cucumis sativus] >KGN64854.1 Histone H2B [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. NCBI nr
Match: XP_016903018.1 (PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo]) HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. NCBI nr
Match: XP_022152883.1 (histone H2B.7 [Momordica charantia]) HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. NCBI nr
Match: XP_022964641.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucurbita maxima] >XP_023519436.1 histone H2B.7-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein) HSP 1 Score: 156.4 bits (394), Expect = 1.4e-38 Identity = 118/131 (90.08%), Postives = 119/131 (90.84%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TAIR10
Match: AT1G07790.1 (Histone superfamily protein) HSP 1 Score: 155.2 bits (391), Expect = 3.0e-38 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein) HSP 1 Score: 154.1 bits (388), Expect = 6.8e-38 Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TAIR10
Match: AT5G59910.1 (Histone superfamily protein) HSP 1 Score: 154.1 bits (388), Expect = 6.8e-38 Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TAIR10
Match: AT3G46030.1 (Histone superfamily protein) HSP 1 Score: 153.3 bits (386), Expect = 1.2e-37 Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. Swiss-Prot
Match: sp|Q9LZ45|H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3) HSP 1 Score: 156.4 bits (394), Expect = 2.5e-37 Identity = 118/131 (90.08%), Postives = 119/131 (90.84%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. Swiss-Prot
Match: sp|Q9LQQ4|H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3) HSP 1 Score: 155.2 bits (391), Expect = 5.5e-37 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5) HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36 Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. Swiss-Prot
Match: sp|Q1S9I9|H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3) HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36 Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. Swiss-Prot
Match: sp|A2XF66|H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_010709 PE=3 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 1.2e-36 Identity = 108/141 (76.60%), Postives = 112/141 (79.43%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TrEMBL
Match: tr|A0A0A0LV55|A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TrEMBL
Match: tr|A0A1S4E463|A0A1S4E463_CUCME (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TrEMBL
Match: tr|A0A0A0LST8|A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1) HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TrEMBL
Match: tr|A0A2G3CVJ9|A0A2G3CVJ9_CAPCH (Histone H2B OS=Capsicum chinense OX=80379 GN=BC332_07861 PE=3 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 4.1e-37 Identity = 112/131 (85.50%), Postives = 113/131 (86.26%), Query Frame = 0
BLAST of CsGy1G013960.1 vs. TrEMBL
Match: tr|A0A2G2ZYA2|A0A2G2ZYA2_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 4.1e-37 Identity = 112/131 (85.50%), Postives = 113/131 (86.26%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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