CsGy1G012730.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012730.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 8143803 .. 8144324 (+)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGTCCCTCCAAAGGCGAAAATTTGCCTCTGGAAGCTTTTAAATGATGTTATTCCCTCTAAGCTTAACCTCTTGAAGATTATTAACAATCCACTTTGTTTTTTTGTAGGGATTGTGAGGAATCGGCTTTGCATATTTTGTGGGGATGCAAGTTTGCTAGAAGAGTCTGGAGGTTATCCCATTCTGCTTTGGGACTGAGCTGTGGAAAATTTAAGTGAGGAAGAGATTAATGTGAGCATTTTAATTTGGTGGGGTCTCTGGTCTTGCAGAAATAATTGGGTGGAATTTTTTTTTACGGCAGAGTCGTCTGTTGGTGTCGAGCTTGCTTTGAAAATTCATTGACAGGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

mRNA sequence

ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

Coding sequence (CDS)

ATGAAGCTTGTGCCACTTCATCCTCGAGCTCTAATAGGGTGCAAGGGCATTGGAAGCCTCTTAGGAAGGCCAATTAGGACTATCCAAGAATCCATGGCAATTGTCTCGAGCTCCCTTGATTTGGCGCCTAAGAAGGAGTTGAGAGTCTCAACACTTGGAAGCAGCTTAAGAATGGCTTGA

Protein sequence

MKLVPLHPRALIGCKGIGSLLGRPIRTIQESMAIVSSSLDLAPKKELRVSTLGSSLRMA

Homology

[Close]

BLAST of CsGy1G012730.1 vs. NCBI nr
Match: KGN64736.1 (hypothetical protein Csa_1G084840 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 4.9e-17
Identity = 59/94 (62.77%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MKLVPLHPRALIGCKGIGSLLGRPIR---------------------------------- 60
          MKLVPLHPRALIGCKGIGSLLGRPIR                                  
Sbjct: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60

[Close]

BLAST of CsGy1G012730.1 vs. TrEMBL
Match: tr|A0A0A0LXK5|A0A0A0LXK5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084840 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 59/94 (62.77%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MKLVPLHPRALIGCKGIGSLLGRPIR---------------------------------- 60
          MKLVPLHPRALIGCKGIGSLLGRPIR                                  
Sbjct: 1  MKLVPLHPRALIGCKGIGSLLGRPIRDCEESALHILWGCKFARRVWRLSHSALGLSCGKF 60

The following BLAST results are available for this feature:

BLAST of CsGy1G012730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64736.1	4.9e-17	62.77	hypothetical protein Csa_1G084840 [Cucumis sativus]	[more]

BLAST of CsGy1G012730.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G012730.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012730.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXK5\|A0A0A0LXK5_CUCSA	3.2e-17	62.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G084840 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G012730	CsGy1G012730	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012730.1.exon.1	CsGy1G012730.1.exon.1	exon
CsGy1G012730.1.exon.2	CsGy1G012730.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012730.1.CDS.1	CsGy1G012730.1.CDS.1	CDS
CsGy1G012730.1.CDS.2	CsGy1G012730.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G012730.1	CsGy1G012730.1-protein	polypeptide