CsGy1G012370.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012370.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Eukaryotic aspartyl protease family protein
Location	Chr1 : 7782483 .. 7784280 (+)
Sequence length	375

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGAAAAGAAGCTTCTTTGAACGTGTGGGTCTTAAAGTTTTGTCCATATTATTATTGTTTGCTTTTCGGCAGCCGCAAACATCAACTTGGAGCCAACTTCATTCCATTATTACAAACATTTCAAATCTAGCTTGTAATCCACCTAACATTTTCATGACACAATATGAATCTTTTTTTAAAAAAAAATCAAAACAAATATACATAATAATTCAATTACAAGTTTTTAAAATTTAGTCTCTATATTTTTATTAATTTTGGTACGACAAATTAGAGATATATATGTAAATATGTTTAGAAAATGAATGGTGATGGGGAGAGATTTTGTTTGAAAGAAAAAAGAGAAAAAAGAAAAGGAAATATATTTGATTAGGATGTGAAAAATAGGGTATAAGGTGTTCCCACTTTGCATGAGAGAAAATGGTCAAACACGTGAGAGAGAGAGAGAGCAGATGTGCTTGAAGTTTCAGACAACAACACTGCTGGTGCTGGACATCACAAAAATTAGATATCAAAACAAGTTTATATTCATTTTCCAAACAAATCATACGTAATCTGATGTGTGAAACTTTGAATCATCCATCCTGCAGATATATTCTTTATTAACGTAACCTTTAGCTTGGATGTGACCAGTAGCTAATTCATCATGATTAATTCAATTTTGGTATGGGTTTTTACTCATATTTTTGAGGGACGGTTGATTACATTTCATATGGACACAACCTTTACGAATATTTCTTTTGTTTTTACTTCATTTATTGTTTTGTTTCAGATTTCACATTTCAATCCCTTTCATGTCCCTTTAAACCAGTTTAAGTTTAAAGTAGTTCCCACCAAACACTACGAAACCCCCCAACAAAAAAAAGTGGAATAAATGTGGTAATTATTTGTTATCTTTTTGGTAGAGATACAATTTCTATCCGGAATAATAGTACACTGCTACAAAAATAGACTTTCTTCACATTTGTAGTTTTAATTACTTGATGTTTTTTTAAAAAAAATGTAAAAACATCAAGAAATTGATGATTTCAAAGAAAAAATGTCAAGAATTTTTATAAAAAGGTGGAGATAGACAAATCTTTAACTTTCTTGATATTTTTTAAACGTCAAGTAATATCAATTAAATTCTTAATGTTTTTAAAACGTCAAGAATTTTATGAAAAGGCATAACGGAGGTAAGTTTTTTAATTTCTTGATATTTTTTAAACGTCAATTGAGATGTTTTTTTTGACGTTTTAAAAACATCAAAGTTCTATAACATAATGATAACAAAATATATATAATTTTTTTATAACCCCCAATTTCTCTTCCTCTTCCACGACAAAAATAAACACCAAATCCCTAACACTCTCTTCAAGCGACGGCAAATCCCAAGTTCTCAACCCTCTCCTGCGACAACCGATGACAACTGATGACAACCAGCGGCAACCCACTACCTCTCTCCTTCTATTTCATCCGTATTTCATCCTACTCGTTCAAAATCTCAGTCTCAAACTTCTTGAAAGAGAAAGAGCTGCGATTGTTGTGCTGGGCGAACTGCCTAAAGGGCGAAGACCTCAATGTTCCGCCTTTTGATTTTGATGAAAGGTACATAGTGGAAGGCTCCGCACGGTTTCGATCTCGAAGAAAAAGGTACGTAGTATTCTTTTCTCTTTGTCGATTATCTTTGATTAAATTGTTTTATCTTGTTCCCTTCCATTTGGGGGTTTTCAGTTTATATTACGCTAATGTTTCGGTTGGAATGTCGTCGTTAGATTTCCTTATGGTGTTGGACACTGGAAGTGATTTGTTTTGA

mRNA sequence

ATGTTAAAGAAAAGAAGCTTCTTTGAACGTGTGGGTCTTAAAGTTTTGTCCATATTATTATTGTTTGCTTTTCGGCAGCCGCAAACATCAACTTGGAGCCAACTTCATTCCATTATTACAAACATTTCAAATCTAGCTTATATATTCTTTATTAACATTTCACATTTCAATCCCTTTCATGTCCCTTTAAACCAGTTTAAGTTTAAAGGCGAAGACCTCAATGTTCCGCCTTTTGATTTTGATGAAAGGTACATAGTGGAAGGCTCCGCACGGTTTCGATCTCGAAGAAAAAGTTTATATTACGCTAATGTTTCGGTTGGAATGTCGTCGTTAGATTTCCTTATGGTGTTGGACACTGGAAGTGATTTGTTTTGA

Coding sequence (CDS)

ATGTTAAAGAAAAGAAGCTTCTTTGAACGTGTGGGTCTTAAAGTTTTGTCCATATTATTATTGTTTGCTTTTCGGCAGCCGCAAACATCAACTTGGAGCCAACTTCATTCCATTATTACAAACATTTCAAATCTAGCTTATATATTCTTTATTAACATTTCACATTTCAATCCCTTTCATGTCCCTTTAAACCAGTTTAAGTTTAAAGGCGAAGACCTCAATGTTCCGCCTTTTGATTTTGATGAAAGGTACATAGTGGAAGGCTCCGCACGGTTTCGATCTCGAAGAAAAAGTTTATATTACGCTAATGTTTCGGTTGGAATGTCGTCGTTAGATTTCCTTATGGTGTTGGACACTGGAAGTGATTTGTTTTGA

Protein sequence

MLKKRSFFERVGLKVLSILLLFAFRQPQTSTWSQLHSIITNISNLAYIFFINISHFNPFHVPLNQFKFKGEDLNVPPFDFDERYIVEGSARFRSRRKSLYYANVSVGMSSLDFLMVLDTGSDLF

Homology

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BLAST of CsGy1G012370.1 vs. TAIR10
Match: AT3G51350.1 (Eukaryotic aspartyl protease family protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.2e-04
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 0


Query: 98  SLYYANVSVGMSSLDFLMVLDTGSDLF 125
           SLYYANVSVG     FL+ LDTGSDLF
Sbjct: 100 SLYYANVSVGTPPSSFLVALDTGSDLF 126

The following BLAST results are available for this feature:

BLAST of CsGy1G012370.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsGy1G012370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51350.1	4.2e-04	74.07	Eukaryotic aspartyl protease family protein	[more]

BLAST of CsGy1G012370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012370.1 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR033121	PEPTIDASE_A1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G012370	CsGy1G012370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G012370.1	CsGy1G012370.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012370.1.exon.1	CsGy1G012370.1.exon.1	exon
CsGy1G012370.1.exon.2	CsGy1G012370.1.exon.2	exon
CsGy1G012370.1.exon.3	CsGy1G012370.1.exon.3	exon
CsGy1G012370.1.exon.4	CsGy1G012370.1.exon.4	exon
CsGy1G012370.1.exon.5	CsGy1G012370.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012370.1.CDS.1	CsGy1G012370.1.CDS.1	CDS
CsGy1G012370.1.CDS.2	CsGy1G012370.1.CDS.2	CDS
CsGy1G012370.1.CDS.3	CsGy1G012370.1.CDS.3	CDS
CsGy1G012370.1.CDS.4	CsGy1G012370.1.CDS.4	CDS
CsGy1G012370.1.CDS.5	CsGy1G012370.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033121	Peptidase family A1 domain	PROSITE	PS51767	PEPTIDASE_A1	coord: 100..124 score: 10.645