CsGy1G012290.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012290.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Squamosa promoter-binding-like protein
Location	Chr1 : 7740095 .. 7741473 (+)
Sequence length	192

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTCCTGGTTTCATGTAAGATCAAATCTTTGTCAATATTCATCGTTATTACATTAAATTTGTTTTTATACTTTTTGTCCATTGTTTAGGTAATTGAGGAAATCTAAAAAGAAAGAGGTTAGGGGTCAACAAGTTGGCAATTTGCCATATACACTAAATCAGCCAAACGCATTTAGTGAAGAATTCAAGGAAGCCTAACAATACTGATTGATGTCCTTGACCTAAATATTGAAACCCCCATTATTGATTCTTAAGCCTAAGATAATATATTAGGGTTAAATTATGTTCTCATCTAAAAATATTGGACAATTAGTTTTTTTTGGGTTTTAAACCCATTTTAACTTGTAGGCATTTTATTAAGAAAAAAAGAAGGGGAAGCTCGAGAATTGTTGAAAGTGTGGTGATCCTCAAATCTAGATAGAGAAAATGCATCTTTAACTTCACGAAACACCAAAAATATCCATTTGTTTGAAAGGGGAAAAGGAAAGAGAGAAAATTTGTAAGTTAGAGAATGGTAGAGCTAGTGTGAAAGAGCTGGAAAATTTTAAAGTAGTATTTAAGTTAACCTAGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGGTTTTTAGACTTGAAGTTGAGTTTTGGCTAGGGGAAGTTGAGTTGAAGACAAAACTCATACCGGAGGTCGGGGTCGACCTCAGCCCCTGACCCTTCTCGATCCTATGTTGGGTTCCATTTTCTTTTTTCTTTATTGTTATTGATTACATTTATTTGGTACAGTATGCACTGTGACAAATCTAAAACTACATTAAAGATAATTTTACATAACTAAACAAAGTTTTGTTTGAAGGGTGCATTTTTATTTTCGTAAGACTTGAATCACAATTTTTTTTTATTGCATAATTGAGAAAGATCAATGGGTATACATAATGTAATTAGAGTAACAATCTTCCAAATTTGCAAGCCATGCCTGATAATATATTGTGGAAACAAAATTTCTCCAGTGGAATATTAGGATCTTAATATGAGCCATTCGGCAAATGTTATGCTCACTTTGCCGATTAATTTGCTAGGGTGGAGCTTCTGGTTTAAGTTTATAAGCACAATGATTTACTGTCTTCATCTTTTTTTCATCTTCTAACTGGTATTGGCCAAAGCTGATCATGTATATATATAGTCCTAGTAGTCATCATAATTGATAACTAAATATTCACCATTTGTATTCCTTCCGTGAAATATGCAGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG

mRNA sequence

ATGTTAGTCCTGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG

Coding sequence (CDS)

ATGTTAGTCCTGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG

Protein sequence

MLVLLYSCSLQESDYHDSLIGSNIGFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST

Homology

[Close]

BLAST of CsGy1G012290.1 vs. NCBI nr
Match: XP_011653273.1 (PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis sativus] >KGN64693.1 hypothetical protein Csa_1G074980 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST
Sbjct: 125 FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 162

[Close]

BLAST of CsGy1G012290.1 vs. NCBI nr
Match: XP_008442764.1 (PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFD+TKRSCRKRLAGHNQRRRKSSSDLHGESST
Sbjct: 130 FHGLQEFDDTKRSCRKRLAGHNQRRRKSSSDLHGESST 167

[Close]

BLAST of CsGy1G012290.1 vs. NCBI nr
Match: XP_022139819.1 (squamosa promoter-binding protein 2-like [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHG++EFDE+KRSCRKRLAGHNQRRRKSSSD+HGESST
Sbjct: 125 FHGVEEFDESKRSCRKRLAGHNQRRRKSSSDVHGESST 162

[Close]

BLAST of CsGy1G012290.1 vs. NCBI nr
Match: XP_022927387.1 (squamosa promoter-binding-like protein 3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD+HG +ST
Sbjct: 119 FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 156

[Close]

BLAST of CsGy1G012290.1 vs. NCBI nr
Match: XP_023001757.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD+HG +ST
Sbjct: 118 FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDVHGGTST 155

[Close]

BLAST of CsGy1G012290.1 vs. TAIR10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-08
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD-LHGESS 63
           FH LQEFDE KRSCR+RLAGHN+RRRKSS +  +GE S
Sbjct: 101 FHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGS 138

[Close]

BLAST of CsGy1G012290.1 vs. TAIR10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5)

HSP 1 Score: 55.1 bits (131), Expect = 1.9e-08
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESS 63
           FH L EFDE KRSCR+RLAGHN+RRRK S D  GE S
Sbjct: 110 FHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGS 146

[Close]

BLAST of CsGy1G012290.1 vs. TAIR10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-08
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD 57
           FH L EFDE KRSCR+RLAGHN+RRRKS++D
Sbjct: 101 FHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of CsGy1G012290.1 vs. TAIR10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12)

HSP 1 Score: 51.2 bits (121), Expect = 2.7e-07
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FH L+EFDE KRSCR+RLAGHN+RRRK++ D  G  ++
Sbjct: 174 FHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

[Close]

BLAST of CsGy1G012290.1 vs. TAIR10
Match: AT2G47070.1 (squamosa promoter binding protein-like 1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD 57
           FH LQEFDE KRSCR+RLAGHN+RRRK++ +
Sbjct: 153 FHLLQEFDEGKRSCRRRLAGHNKRRRKTNPE 183

[Close]

BLAST of CsGy1G012290.1 vs. Swiss-Prot
Match: sp|Q38741|SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLH 59
           FH L EFDE KRSCR+RLAGHN+RRRKSS D H
Sbjct: 99  FHELSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131

[Close]

BLAST of CsGy1G012290.1 vs. Swiss-Prot
Match: sp|Q38740|SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGE 61
           FH L EFD+TKRSCR+RLAGHN+RRRKSS + H E
Sbjct: 132 FHDLSEFDQTKRSCRRRLAGHNERRRKSSLESHKE 166

[Close]

BLAST of CsGy1G012290.1 vs. Swiss-Prot
Match: sp|Q9S7A9|SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD-LHGESS 63
           FH LQEFDE KRSCR+RLAGHN+RRRKSS +  +GE S
Sbjct: 101 FHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGS 138

[Close]

BLAST of CsGy1G012290.1 vs. Swiss-Prot
Match: sp|Q9S758|SPL5_ARATH (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESS 63
           FH L EFDE KRSCR+RLAGHN+RRRK S D  GE S
Sbjct: 110 FHELPEFDEAKRSCRRRLAGHNERRRKISGDSFGEGS 146

[Close]

BLAST of CsGy1G012290.1 vs. Swiss-Prot
Match: sp|Q6Z461|SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSD-LHGES 62
           FH L EFD+ KRSCR+RLAGHN+RRRKS++D  HGE+
Sbjct: 157 FHELTEFDDAKRSCRRRLAGHNERRRKSAADTAHGEN 193

[Close]

BLAST of CsGy1G012290.1 vs. TrEMBL
Match: tr|A0A0A0LSD9|A0A0A0LSD9_CUCSA (Squamosa promoter-binding-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G074980 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST
Sbjct: 125 FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 162

[Close]

BLAST of CsGy1G012290.1 vs. TrEMBL
Match: tr|A0A1S3B6H6|A0A1S3B6H6_CUCME (squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST 64
           FHGLQEFD+TKRSCRKRLAGHNQRRRKSSSDLHGESST
Sbjct: 130 FHGLQEFDDTKRSCRKRLAGHNQRRRKSSSDLHGESST 167

[Close]

BLAST of CsGy1G012290.1 vs. TrEMBL
Match: tr|W9SN75|W9SN75_9ROSA (Squamosa promoter-binding protein 1 OS=Morus notabilis OX=981085 GN=L484_014488 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESS 63
           FHGL EFD+TKRSCR+RLAGHN+RRRKSSSDLH E S
Sbjct: 133 FHGLAEFDDTKRSCRRRLAGHNERRRKSSSDLHREGS 169

[Close]

BLAST of CsGy1G012290.1 vs. TrEMBL
Match: tr|A0A1U8MTA5|A0A1U8MTA5_GOSHI (Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 GN=LOC107941054 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESS 63
           FH L EFDETKRSCR+RLAGHN+RRRKSSS+ HGE S
Sbjct: 104 FHELSEFDETKRSCRRRLAGHNERRRKSSSEYHGEGS 140

[Close]

BLAST of CsGy1G012290.1 vs. TrEMBL
Match: tr|A0A0K0K3Z1|A0A0K0K3Z1_GOSHI (Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 26  FHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESS 63
           FH L EFDETKRSCR+RLAGHN+RRRKSSS+ HGE S
Sbjct: 103 FHELSEFDETKRSCRRRLAGHNERRRKSSSEYHGEGS 139

The following BLAST results are available for this feature:

BLAST of CsGy1G012290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653273.1	1.5e-11	100.00	PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis sativus] >KGN64693....	[more]
XP_008442764.1	3.3e-11	97.37	PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis melo]	[more]
XP_022139819.1	4.7e-10	89.47	squamosa promoter-binding protein 2-like [Momordica charantia]	[more]
XP_022927387.1	4.7e-10	92.11	squamosa promoter-binding-like protein 3 isoform X1 [Cucurbita moschata]	[more]
XP_023001757.1	4.7e-10	92.11	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]

BLAST of CsGy1G012290.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53160.2	1.4e-08	73.68	squamosa promoter binding protein-like 4	[more]
AT3G15270.1	1.9e-08	72.97	squamosa promoter binding protein-like 5	[more]
AT2G33810.1	5.4e-08	77.42	squamosa promoter binding protein-like 3	[more]
AT3G60030.1	2.7e-07	63.16	squamosa promoter-binding protein-like 12	[more]
AT2G47070.1	1.0e-06	74.19	squamosa promoter binding protein-like 1	[more]

BLAST of CsGy1G012290.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38741\|SBP1_ANTMA	1.5e-07	78.79	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
sp\|Q38740\|SBP2_ANTMA	2.0e-07	74.29	Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV...	[more]
sp\|Q9S7A9\|SPL4_ARATH	2.6e-07	73.68	Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4...	[more]
sp\|Q9S758\|SPL5_ARATH	3.3e-07	72.97	Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5...	[more]
sp\|Q6Z461\|SPL13_ORYSJ	9.7e-07	70.27	Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of CsGy1G012290.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSD9\|A0A0A0LSD9_CUCSA	9.7e-12	100.00	Squamosa promoter-binding-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G07498...	[more]
tr\|A0A1S3B6H6\|A0A1S3B6H6_CUCME	2.2e-11	97.37	squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540...	[more]
tr\|W9SN75\|W9SN75_9ROSA	5.0e-08	83.78	Squamosa promoter-binding protein 1 OS=Morus notabilis OX=981085 GN=L484_014488 ...	[more]
tr\|A0A1U8MTA5\|A0A1U8MTA5_GOSHI	1.9e-07	81.08	Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 GN=LOC10794...	[more]
tr\|A0A0K0K3Z1\|A0A0K0K3Z1_GOSHI	1.9e-07	81.08	Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036893	SBP_sf
IPR004333	SBP_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G012290	CsGy1G012290	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G012290.1	CsGy1G012290.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012290.1.exon.1	CsGy1G012290.1.exon.1	exon
CsGy1G012290.1.exon.2	CsGy1G012290.1.exon.2	exon
CsGy1G012290.1.exon.3	CsGy1G012290.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G012290.1.CDS.1	CsGy1G012290.1.CDS.1	CDS
CsGy1G012290.1.CDS.2	CsGy1G012290.1.CDS.2	CDS
CsGy1G012290.1.CDS.3	CsGy1G012290.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 26..52 e-value: 3.3E-9 score: 36.7
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 1..53 score: 11.99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63
None	No IPR available	PANTHER	PTHR31251	FAMILY NOT NAMED	coord: 26..53
IPR036893	SBP domain superfamily	SUPERFAMILY	SSF103612	SBT domain	coord: 26..57