CsGy1G012290 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGTCCTGGTTTCATGTAAGATCAAATCTTTGTCAATATTCATCGTTATTACATTAAATTTGTTTTTATACTTTTTGTCCATTGTTTAGGTAATTGAGGAAATCTAAAAAGAAAGAGGTTAGGGGTCAACAAGTTGGCAATTTGCCATATACACTAAATCAGCCAAACGCATTTAGTGAAGAATTCAAGGAAGCCTAACAATACTGATTGATGTCCTTGACCTAAATATTGAAACCCCCATTATTGATTCTTAAGCCTAAGATAATATATTAGGGTTAAATTATGTTCTCATCTAAAAATATTGGACAATTAGTTTTTTTTGGGTTTTAAACCCATTTTAACTTGTAGGCATTTTATTAAGAAAAAAAGAAGGGGAAGCTCGAGAATTGTTGAAAGTGTGGTGATCCTCAAATCTAGATAGAGAAAATGCATCTTTAACTTCACGAAACACCAAAAATATCCATTTGTTTGAAAGGGGAAAAGGAAAGAGAGAAAATTTGTAAGTTAGAGAATGGTAGAGCTAGTGTGAAAGAGCTGGAAAATTTTAAAGTAGTATTTAAGTTAACCTAGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGGTTTTTAGACTTGAAGTTGAGTTTTGGCTAGGGGAAGTTGAGTTGAAGACAAAACTCATACCGGAGGTCGGGGTCGACCTCAGCCCCTGACCCTTCTCGATCCTATGTTGGGTTCCATTTTCTTTTTTCTTTATTGTTATTGATTACATTTATTTGGTACAGTATGCACTGTGACAAATCTAAAACTACATTAAAGATAATTTTACATAACTAAACAAAGTTTTGTTTGAAGGGTGCATTTTTATTTTCGTAAGACTTGAATCACAATTTTTTTTTATTGCATAATTGAGAAAGATCAATGGGTATACATAATGTAATTAGAGTAACAATCTTCCAAATTTGCAAGCCATGCCTGATAATATATTGTGGAAACAAAATTTCTCCAGTGGAATATTAGGATCTTAATATGAGCCATTCGGCAAATGTTATGCTCACTTTGCCGATTAATTTGCTAGGGTGGAGCTTCTGGTTTAAGTTTATAAGCACAATGATTTACTGTCTTCATCTTTTTTTCATCTTCTAACTGGTATTGGCCAAAGCTGATCATGTATATATATAGTCCTAGTAGTCATCATAATTGATAACTAAATATTCACCATTTGTATTCCTTCCGTGAAATATGCAGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG ATGTTAGTCCTGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG ATGTTAGTCCTGCTCTACTCTTGTTCCCTTCAAGAATCTGATTACCACGATAGCTTGATTGGATCCAACATCGGATTTCATGGCCTACAAGAGTTCGATGAAACAAAAAGGAGTTGCCGGAAGCGGTTGGCTGGACACAACCAGCGGCGGCGGAAGAGCTCATCAGATCTCCATGGCGAAAGCTCAACCTAG MLVLLYSCSLQESDYHDSLIGSNIGFHGLQEFDETKRSCRKRLAGHNQRRRKSSSDLHGESST
BLAST of CsGy1G012290 vs. NCBI nr
Match: XP_011653273.1 (PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis sativus] >KGN64693.1 hypothetical protein Csa_1G074980 [Cucumis sativus]) HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11 Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsGy1G012290 vs. NCBI nr
Match: XP_008442764.1 (PREDICTED: squamosa promoter-binding-like protein 3 [Cucumis melo]) HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11 Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsGy1G012290 vs. NCBI nr
Match: XP_022139819.1 (squamosa promoter-binding protein 2-like [Momordica charantia]) HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10 Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsGy1G012290 vs. NCBI nr
Match: XP_022927387.1 (squamosa promoter-binding-like protein 3 isoform X1 [Cucurbita moschata]) HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10 Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
BLAST of CsGy1G012290 vs. NCBI nr
Match: XP_023001757.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima]) HSP 1 Score: 72.8 bits (177), Expect = 4.7e-10 Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0
BLAST of CsGy1G012290 vs. TAIR10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4) HSP 1 Score: 55.5 bits (132), Expect = 1.4e-08 Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0
BLAST of CsGy1G012290 vs. TAIR10
Match: AT3G15270.1 (squamosa promoter binding protein-like 5) HSP 1 Score: 55.1 bits (131), Expect = 1.9e-08 Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of CsGy1G012290 vs. TAIR10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3) HSP 1 Score: 53.5 bits (127), Expect = 5.4e-08 Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of CsGy1G012290 vs. TAIR10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12) HSP 1 Score: 51.2 bits (121), Expect = 2.7e-07 Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of CsGy1G012290 vs. TAIR10
Match: AT2G47070.1 (squamosa promoter binding protein-like 1) HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06 Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of CsGy1G012290 vs. Swiss-Prot
Match: sp|Q38741|SBP1_ANTMA (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07 Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of CsGy1G012290 vs. Swiss-Prot
Match: sp|Q38740|SBP2_ANTMA (Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 2.0e-07 Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of CsGy1G012290 vs. Swiss-Prot
Match: sp|Q9S7A9|SPL4_ARATH (Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=SPL4 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 2.6e-07 Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0
BLAST of CsGy1G012290 vs. Swiss-Prot
Match: sp|Q9S758|SPL5_ARATH (Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.3e-07 Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of CsGy1G012290 vs. Swiss-Prot
Match: sp|Q6Z461|SPL13_ORYSJ (Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL13 PE=2 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07 Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0
BLAST of CsGy1G012290 vs. TrEMBL
Match: tr|A0A0A0LSD9|A0A0A0LSD9_CUCSA (Squamosa promoter-binding-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G074980 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12 Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsGy1G012290 vs. TrEMBL
Match: tr|A0A1S3B6H6|A0A1S3B6H6_CUCME (squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.2e-11 Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0
BLAST of CsGy1G012290 vs. TrEMBL
Match: tr|W9SN75|W9SN75_9ROSA (Squamosa promoter-binding protein 1 OS=Morus notabilis OX=981085 GN=L484_014488 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08 Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0
BLAST of CsGy1G012290 vs. TrEMBL
Match: tr|A0A1U8MTA5|A0A1U8MTA5_GOSHI (Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 GN=LOC107941054 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07 Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0
BLAST of CsGy1G012290 vs. TrEMBL
Match: tr|A0A0K0K3Z1|A0A0K0K3Z1_GOSHI (Squamosa promoter-binding-like protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07 Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |