CsGy1G003340.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G003340.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 2103517 .. 2104584 (+)
Sequence length369
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTAGAGTGAGTCTTATTTTTTGTTCTGAAGTACATAGTCTTGACTATGGTTAAGTAAATGAAATGATTCCATCATGTATCAACTTTAATAACAAATAAACTATGCAGAAAACAGGCATTCTGTGGAAAAATTGAACTGTTTCATAAGTTATTACACTGAGAGCGACAAATACTTTTTAATCATTATACAATAAAATGATTGAACGTATAATGTAACTATTTGTACAACACAATTCGCTCCAAAACTACACAAGAATGAGGTTGAGTTAAATAACCCATCCACGAATAGGAACAAGCTCATATTGCCTTTGATTTAAGCATCAGTAAATTCAACATCATTGACCAGATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAAGTAAGGATAGGCCTCTGGAGGTGGCATCACACAGTTATCACCATTGAAATAAACTCTTCTTGGGAAAGCCCAACCCTTGTCGAAAGTGAAAGTGTTCTGGTCTTTTTGAAATAGAAGCTCAGACTGCACATTACCAAGAGGACCAGCTTGATTGAGCAGATCGTTGTAGAACTTAACTCCCCATAACATCGCGGTATCATCTGCAAGACAGTGCCATAGTTACCAACCATAAGGAGAAACTCAACGGCATAACGCCGATTCTTTCCAATCAAAAGAGATGGGAATAGATACATTCAGAGATAACTTACTTAGGTCACCATATGGGCTCAACGACTTATAGTTAAAGCTGAATAATTTAGTGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

mRNA sequence

ATGATTCTAGAATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAATGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

Coding sequence (CDS)

ATGATTCTAGAATTGCCAAAAGCTCGTGGGAAATCTAGAGTGGTAGAGCAACTAATAGTGTTTGTTGTCCCCGTAGGCGTGACTTATTGTGCAAAATTCAACAGTAATGCCAAAGATATTAAGATGGTCACAAGTAGAGATATAGCTGGTCTGGAACTGGCATTTGGCAATGATATTATCAAAATTGGGATGCTGCACCACCAGATTCCAGAGAGTGTAGTTCATTCGGTAATTGAAATTTGTGATTGTGATCTTCACTCTCCAGTAATCCTTGTAATTCAGCTTCACGTGCCAATGGACACGAATAGGGCACATGTGGCTGGTACACTGGACCAAGGGTGGATTGTTGCCCGATTTATCAGGAGCTGA

Protein sequence

MILELPKARGKSRVVEQLIVFVVPVGVTYCAKFNSNAKDIKMVTSRDIAGLELAFGNDIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQGWIVARFIRS
Homology
[Close]
BLAST of CsGy1G003340.1 vs. NCBI nr
Match: BAS84703.1 (Os03g0416250 [Oryza sativa Japonica Group])

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQ 113
           D++++G+L  + P  VVH+V+E+CD DL +PV+LV++L VP+  +RAHV   L Q
Sbjct: 15  DVVEVGVLGDERPLGVVHAVVEVCDGDLGAPVVLVVELDVPVHADRAHVRRALQQ 69

[Close]
BLAST of CsGy1G003340.1 vs. NCBI nr
Match: BAT02551.1 (Os07g0604433, partial [Oryza sativa Japonica Group])

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHV 107
           D++++G+L ++ P  VVH V+E+ D DL +PV+ V++LHVP+  +RAHV
Sbjct: 96  DVVEVGVLGNERPPGVVHPVVEVDDGDLGAPVLPVVELHVPVHPHRAHV 144

[Close]
BLAST of CsGy1G003340.1 vs. TrEMBL
Match: tr|A0A0P0VZJ0|A0A0P0VZJ0_ORYSJ (Os03g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0416250 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHVAGTLDQ 113
           D++++G+L  + P  VVH+V+E+CD DL +PV+LV++L VP+  +RAHV   L Q
Sbjct: 15  DVVEVGVLGDERPLGVVHAVVEVCDGDLGAPVVLVVELDVPVHADRAHVRRALQQ 69

[Close]
BLAST of CsGy1G003340.1 vs. TrEMBL
Match: tr|A0A0P0X8Q8|A0A0P0X8Q8_ORYSJ (Os07g0604433 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0604433 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.7e-04
Identity = 23/49 (46.94%), Postives = 38/49 (77.55%), Query Frame = 0 

Query: 58  DIIKIGMLHHQIPESVVHSVIEICDCDLHSPVILVIQLHVPMDTNRAHV 107
           D++++G+L ++ P  VVH V+E+ D DL +PV+ V++LHVP+  +RAHV
Sbjct: 96  DVVEVGVLGNERPPGVVHPVVEVDDGDLGAPVLPVVELHVPVHPHRAHV 144

The following BLAST results are available for this feature:
BLAST of CsGy1G003340.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BAS84703.12.8e-0647.27Os03g0416250 [Oryza sativa Japonica Group][more]
BAT02551.12.6e-0446.94Os07g0604433, partial [Oryza sativa Japonica Group][more]
BLAST of CsGy1G003340.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G003340.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G003340.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0P0VZJ0|A0A0P0VZJ0_ORYSJ1.8e-0647.27Os03g0416250 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0416250 PE... [more]
tr|A0A0P0X8Q8|A0A0P0X8Q8_ORYSJ1.7e-0446.94Os07g0604433 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G003340CsGy1G003340gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G003340.1CsGy1G003340.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G003340.1.exon.1CsGy1G003340.1.exon.1exon
CsGy1G003340.1.exon.2CsGy1G003340.1.exon.2exon
CsGy1G003340.1.exon.3CsGy1G003340.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G003340.1.CDS.1CsGy1G003340.1.CDS.1CDS
CsGy1G003340.1.CDS.2CsGy1G003340.1.CDS.2CDS
CsGy1G003340.1.CDS.3CsGy1G003340.1.CDS.3CDS